Paenibacillus polymyxa str. YC0136

Gram-positiveRodMotileFacultative anaerobe

Kingdom

Bacillati

Phylum

Bacillota

Class

Bacilli

Order

Caryophanales

Family

Paenibacillaceae

Genus

Paenibacillus

Description

Paenibacillus polymyxa strain YC0136 is a Gram-positive, rod-shaped bacterium that demonstrates the capability of sporulation, allowing it to survive in various environments. This strain is classified as a chemoheterotroph, indicating that it derives energy from organic compounds, adapting to utilize a range of substrates for growth. P. polymyxa str. YC0136 thrives optimally at a temperature of 37.0°C, which is typical for many mesophilic bacteria. As a facultative anaerobe, this strain can grow in both the presence and absence of oxygen, providing it with a versatile metabolic flexibility that enables colonization of diverse habitats. The ability to sporulate is particularly advantageous, allowing it to withstand unfavorable conditions, such as desiccation or nutrient limitation, thereby extending its ecological range. This versatility in energy utilization and growth conditions suggests that P. polymyxa str. YC0136 may play a significant role in various biogeochemical cycles, particularly in nutrient cycling within its habitats. Its sporulating nature may also contribute to its persistence in environments subject to fluctuation, making it a potential candidate for applications in agriculture or bioremediation, where resilience and adaptability are crucial for sustainability.

Taxonomy

KingdomBacillati
PhylumBacillota
ClassBacilli
OrderCaryophanales
FamilyPaenibacillaceae
GenusPaenibacillus
SpeciesPaenibacillus polymyxa
StrainYC0136

Profile

Physiology
Gram staining propertiesPositive
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranesNot Available
Image of Paenibacillus polymyxa str. YC0136
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsFacultative anaerobe
Optimal temperature37
Temperature rangeMesophilic
HabitatMultiple
Biotic relationshipFree living
Host(s)Gallus gallus, Viridiplantae, Triticum aestivum
Cell arrangementNot Available
SporulationSporulating
Energy sourceChemoheterotroph
PathogenicityNot Available

Genome Summary

Paenibacillus polymyxa strain YC0136 chromosome, complete genome.

Gene Summary

Adenine Count

1522487 bp

Thymine Count

1527686 bp

Guanine Count

1279056 bp

Cytosine Count

1292499 bp

Genome Length

5621728 bp

Protein-coding Genes

4808 genes

Non-Coding Genes

156 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
atp phosphoribosyltransferasePPYC1_RS00875Not AvailablePositive199323 - 19996723871.3
histidinol dehydrogenasePPYC1_RS00880Not AvailablePositive200036 - 20134947267.2
imidazoleglycerol-phosphate dehydratase hisbPPYC1_RS00885Not AvailablePositive201333 - 20194122448.6
imidazole glycerol phosphate synthase subunit hishPPYC1_RS00890Not AvailablePositive201945 - 20257422661.2
1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerasePPYC1_RS00895Not AvailablePositive202670 - 20340125769.8
imidazole glycerol phosphate synthase subunit hisfPPYC1_RS00900Not AvailablePositive203413 - 20417126895.1
bifunctional phosphoribosyl-amp cyclohydrolase/phosphoribosyl-atp diphosphatase hisiePPYC1_RS00905Not AvailablePositive204168 - 20490827415.3
histidinol-phosphatase hisjPPYC1_RS00910Not AvailablePositive204945 - 20576931517.7
tetratricopeptide repeat proteinPPYC1_RS00915Not AvailablePositive206007 - 20777667712.9
thioredoxin-disulfide reductasePPYC1_RS00920Not AvailablePositive207816 - 20876934387.8

Displaying genes 211 – 220 of 4964 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.