Bacillus mycoides str. ATCC 6462

Gram-positiveRodFacultative anaerobe

Kingdom

Bacillati

Phylum

Bacillota

Class

Bacilli

Order

Caryophanales

Family

Bacillaceae

Genus

Bacillus

Description

Bacillus mycoides str. ATCC 6462 is a Gram-positive, rod-shaped bacterium that thrives in the deep sea, specifically within the hydrothermal vent field of the Iheya Ridge in the Okinawa Trough. This strain exhibits facultative anaerobic respiration, allowing it to utilize both aerobic and anaerobic metabolic pathways depending on the availability of oxygen in its environment. The deep-sea habitat of B. mycoides str. ATCC 6462 suggests an adaptation to extreme conditions, including high pressures and variable temperatures typically found in hydrothermal vent ecosystems. This adaptation may confer unique metabolic capabilities that enable it to exploit the rich nutrient sources available in such environments, potentially involving chemolithotrophic processes that are characteristic of many vent-associated microbes. Understanding the ecological role of B. mycoides str. ATCC 6462 in hydrothermal systems may provide insights into nutrient cycling and microbial interactions under extreme conditions, highlighting the importance of such extremophiles in maintaining the balance of deep-sea ecosystems.

Taxonomy

KingdomBacillati
PhylumBacillota
ClassBacilli
OrderCaryophanales
FamilyBacillaceae
GenusBacillus
SpeciesBacillus mycoides
StrainATCC 6462

Profile

Physiology
Gram staining propertiesPositive
ShapeRod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Image of Bacillus mycoides str. ATCC 6462
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsFacultative anaerobe
Optimal temperatureNot Available
Temperature rangepsychrotolerant
Habitatdeep sea; Iheya Ridge hydrothermal vent field of Okinawa Trough
Biotic relationshipNot Available
Host(s)Homo sapiens, Viridiplantae, Triticum aestivum
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNon-pathogenic

Genome Summary

Bacillus mycoides strain ATCC 6462 chromosome, complete genome.

Gene Summary

Adenine Count

1698620 bp

Thymine Count

1691769 bp

Guanine Count

938636 bp

Cytosine Count

926843 bp

Genome Length

5255868 bp

Protein-coding Genes

5318 genes

Non-Coding Genes

159 genes

# of Chromosomes/Plasmids

3

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
nudix hydrolaseBG05_RS28445Not AvailableNegative5211013 - 521147417479.1
yebc/pmpr family dna-binding transcriptional regulatorBG05_RS28450Not AvailableNegative5211624 - 521234326436.8
duf3884 family proteinBG05_RS28455Not AvailablePositive5213004 - 521332412255.6
gntr family transcriptional regulatorBG05_RS28460Not AvailableNegative5213772 - 52140209191.22
smi1/knr4 family proteinBG05_RS28465Not AvailableNegative5214291 - 521474618133.5
yrha family proteinBG05_RS28470Not AvailableNegative5214765 - 521522317752.8
t7ss effector lxg polymorphic toxinBG05_RS28475Not AvailableNegative5215244 - 521688460192.2
tetratricopeptide repeat proteinBG05_RS28480Not AvailablePositive5217111 - 521820542718.8
hypothetical proteinBG05_RS28485Not AvailablePositive5218205 - 52184719285.83
hypothetical proteinBG05_RS28490Not AvailablePositive5218569 - 521939632765.4

Displaying genes 5421 – 5430 of 5502 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

295 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000173(R)-3-Hydroxybutyric acidC4H8O3Chemical structure of (R)-3-Hydroxybutyric acid625-72-3
Average104.0473Da
Monoisotopic104.047344122Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000893crotonobetaineC7H13NO2Chemical structure of crotonobetaine927-89-9
Average143.1836Da
Monoisotopic143.0946287Da
BASm0000989GlycerolC3H8O3Chemical structure of Glycerol56-81-5
Average92.0938Da
Monoisotopic92.04734412Da
BASm0001035indole-3-pyruvateC11H8NO3Chemical structure of indole-3-pyruvate35656-49-6
Average202.1861Da
Monoisotopic202.0504181Da
BASm0001167triphosphateO10P3Chemical structure of triphosphate14127-68-5
Average252.9153Da
Monoisotopic252.8704308Da
BASm0001360methanesulfonateCH3O3SChemical structure of methanesulfonate59721-29-8
Average95.09Da
Monoisotopic94.980838711Da
BASm0001639CobinamideC48H72CoN11O8Chemical structure of Cobinamide13497-85-3
Average990.0874Da
Monoisotopic989.4897335Da

Displaying 1–10 of 295 metabolites

Health Effects

Health ConditionRelationReference
Food poisoningCausesPMC6842932
EmesisCausesPMC2783214

Displaying health effects 1 – 2 of 2 in total