Bacillus mycoides str. ATCC 6462

Gram-positiveRodFacultative anaerobe

Kingdom

Bacillati

Phylum

Bacillota

Class

Bacilli

Order

Caryophanales

Family

Bacillaceae

Genus

Bacillus

Description

Bacillus mycoides str. ATCC 6462 is a Gram-positive, rod-shaped bacterium that thrives in the deep sea, specifically within the hydrothermal vent field of the Iheya Ridge in the Okinawa Trough. This strain exhibits facultative anaerobic respiration, allowing it to utilize both aerobic and anaerobic metabolic pathways depending on the availability of oxygen in its environment. The deep-sea habitat of B. mycoides str. ATCC 6462 suggests an adaptation to extreme conditions, including high pressures and variable temperatures typically found in hydrothermal vent ecosystems. This adaptation may confer unique metabolic capabilities that enable it to exploit the rich nutrient sources available in such environments, potentially involving chemolithotrophic processes that are characteristic of many vent-associated microbes. Understanding the ecological role of B. mycoides str. ATCC 6462 in hydrothermal systems may provide insights into nutrient cycling and microbial interactions under extreme conditions, highlighting the importance of such extremophiles in maintaining the balance of deep-sea ecosystems.

Taxonomy

KingdomBacillati
PhylumBacillota
ClassBacilli
OrderCaryophanales
FamilyBacillaceae
GenusBacillus
SpeciesBacillus mycoides
StrainATCC 6462

Profile

Physiology
Gram staining propertiesPositive
ShapeRod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Image of Bacillus mycoides str. ATCC 6462
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsFacultative anaerobe
Optimal temperatureNot Available
Temperature rangepsychrotolerant
Habitatdeep sea; Iheya Ridge hydrothermal vent field of Okinawa Trough
Biotic relationshipNot Available
Host(s)Homo sapiens, Viridiplantae, Triticum aestivum
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNon-pathogenic

Genome Summary

Bacillus mycoides strain ATCC 6462 chromosome, complete genome.

Gene Summary

Adenine Count

1698620 bp

Thymine Count

1691769 bp

Guanine Count

938636 bp

Cytosine Count

926843 bp

Genome Length

5255868 bp

Protein-coding Genes

5318 genes

Non-Coding Genes

159 genes

# of Chromosomes/Plasmids

3

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
cytochrome c oxidase subunit iBG05_RS12190Not AvailablePositive1963713 - 196554867850.2
cytochrome c oxidase subunit iiiBG05_RS12195Not AvailablePositive1965548 - 196617123823.4
cytochrome c oxidase subunit ivbBG05_RS12200Not AvailablePositive1966175 - 196650712608.0
cytochrome c oxidase assembly factor ctagBG05_RS12205Not AvailablePositive1966589 - 196749434619.6
yugn family proteinBG05_RS12210Not AvailableNegative1967531 - 196789614202.9
cap domain-containing proteinBG05_RS12215Not AvailablePositive1968104 - 196913839566.1
ylbd family proteinBG05_RS12220Not AvailablePositive1969312 - 196974916977.7
ylbe-like family proteinBG05_RS12225Not AvailablePositive1969761 - 19700069866.94
histidine phosphatase family proteinBG05_RS12230Not AvailablePositive1970084 - 197065620969.1
ylbf family regulatorBG05_RS12235Not AvailablePositive1970773 - 197122516561.8

Displaying genes 2121 – 2130 of 5502 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

295 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000173(R)-3-Hydroxybutyric acidC4H8O3Chemical structure of (R)-3-Hydroxybutyric acid625-72-3
Average104.0473Da
Monoisotopic104.047344122Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000893crotonobetaineC7H13NO2Chemical structure of crotonobetaine927-89-9
Average143.1836Da
Monoisotopic143.0946287Da
BASm0000989GlycerolC3H8O3Chemical structure of Glycerol56-81-5
Average92.0938Da
Monoisotopic92.04734412Da
BASm0001035indole-3-pyruvateC11H8NO3Chemical structure of indole-3-pyruvate35656-49-6
Average202.1861Da
Monoisotopic202.0504181Da
BASm0001167triphosphateO10P3Chemical structure of triphosphate14127-68-5
Average252.9153Da
Monoisotopic252.8704308Da
BASm0001360methanesulfonateCH3O3SChemical structure of methanesulfonate59721-29-8
Average95.09Da
Monoisotopic94.980838711Da
BASm0001639CobinamideC48H72CoN11O8Chemical structure of Cobinamide13497-85-3
Average990.0874Da
Monoisotopic989.4897335Da

Displaying 1–10 of 295 metabolites

Health Effects

Health ConditionRelationReference
Food poisoningCausesPMC6842932
EmesisCausesPMC2783214

Displaying health effects 1 – 2 of 2 in total