Bacillus mycoides str. DB-1

Gram-positiveRodFacultative anaerobe

Kingdom

Bacillati

Phylum

Bacillota

Class

Bacilli

Order

Caryophanales

Family

Bacillaceae

Genus

Bacillus

Description

Bacillus mycoides strain DB-1 is a Gram-positive, rod-shaped bacterium that has been isolated from the deep sea, specifically from the Iheya Ridge hydrothermal vent field in the Okinawa Trough. As a facultative anaerobe, this microbe is capable of surviving in both aerobic and anaerobic environments, which may confer an ecological advantage in the extreme conditions typically found at hydrothermal vents, where oxygen levels can fluctuate significantly. The habitat of Bacillus mycoides str. DB-1 suggests its potential involvement in biogeochemical cycles within deep-sea ecosystems, as hydrothermal vents are known to host unique microbial communities that contribute to nutrient cycling under high-pressure and high-temperature conditions. The ability of this strain to thrive in such an environment may indicate its adaptation to utilize diverse energy sources available in the vent ecosystem. Further research into the metabolic pathways and ecological roles of Bacillus mycoides str. DB-1 could provide insights into the microbial dynamics of extreme habitats and their contributions to the overall health and functioning of deep-sea environments.

Taxonomy

KingdomBacillati
PhylumBacillota
ClassBacilli
OrderCaryophanales
FamilyBacillaceae
GenusBacillus
SpeciesBacillus mycoides
StrainDB-1

Profile

Physiology
Gram staining propertiesPositive
ShapeRod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Image of Bacillus mycoides str. DB-1
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsFacultative anaerobe
Optimal temperatureNot Available
Temperature rangepsychrotolerant
Habitatdeep sea; Iheya Ridge hydrothermal vent field of Okinawa Trough
Biotic relationshipNot Available
Host(s)Homo sapiens, Viridiplantae, Triticum aestivum
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNon-pathogenic

Genome Summary

Bacillus mycoides strain DB-1 Ga0227246_172, whole genome shotgun

Gene Summary

Adenine Count

1890671 bp

Thymine Count

1862314 bp

Guanine Count

1046730 bp

Cytosine Count

993919 bp

Genome Length

5794236 bp

Protein-coding Genes

5724 genes

Non-Coding Genes

159 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
transglutaminase superfamily proteinDET55_12335Not AvailablePositive4178277 - 417875618130.2
putative nucleotidyltransferase-like proteinDET55_12336Not AvailablePositive4178749 - 417993647018.6
atp-binding cassette subfamily c proteinDET55_12337Not AvailablePositive4179948 - 418174767930.0
padr family transcriptional regulatorDET55_12338Not AvailablePositive4181976 - 418229912576.2
putative membrane proteinDET55_12339Not AvailablePositive4182292 - 418283420550.6
duf4097 and duf4098 domain-containing protein yvlbDET55_12340Not AvailablePositive4182838 - 418363828590.9
sos-response transcriptional repressor lexaDET55_12341Not AvailableNegative4183742 - 418435622630.3
dna invertase pin-like site-specific dna recombinaseDET55_12342Not AvailablePositive4184498 - 418515425361.5
uncharacterized protein ynzc (upf0291/duf896 family)DET55_12343Not AvailablePositive4185200 - 41854399128.07
5'-nucleotidase/2',3'-cyclic-nucleotide 2'-phosphodiesterase/3'-nucleotidaseDET55_12344Not AvailableNegative4185480 - 418706660000.7

Displaying genes 4231 – 4240 of 5883 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

Health ConditionRelationReference
Food poisoningCausesPMC6842932
EmesisCausesPMC2783214

Displaying health effects 1 – 2 of 2 in total