Bacillus mycoides str. DB-1

Gram-positiveRodFacultative anaerobe

Kingdom

Bacillati

Phylum

Bacillota

Class

Bacilli

Order

Caryophanales

Family

Bacillaceae

Genus

Bacillus

Description

Bacillus mycoides strain DB-1 is a Gram-positive, rod-shaped bacterium that has been isolated from the deep sea, specifically from the Iheya Ridge hydrothermal vent field in the Okinawa Trough. As a facultative anaerobe, this microbe is capable of surviving in both aerobic and anaerobic environments, which may confer an ecological advantage in the extreme conditions typically found at hydrothermal vents, where oxygen levels can fluctuate significantly. The habitat of Bacillus mycoides str. DB-1 suggests its potential involvement in biogeochemical cycles within deep-sea ecosystems, as hydrothermal vents are known to host unique microbial communities that contribute to nutrient cycling under high-pressure and high-temperature conditions. The ability of this strain to thrive in such an environment may indicate its adaptation to utilize diverse energy sources available in the vent ecosystem. Further research into the metabolic pathways and ecological roles of Bacillus mycoides str. DB-1 could provide insights into the microbial dynamics of extreme habitats and their contributions to the overall health and functioning of deep-sea environments.

Taxonomy

KingdomBacillati
PhylumBacillota
ClassBacilli
OrderCaryophanales
FamilyBacillaceae
GenusBacillus
SpeciesBacillus mycoides
StrainDB-1

Profile

Physiology
Gram staining propertiesPositive
ShapeRod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Image of Bacillus mycoides str. DB-1
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsFacultative anaerobe
Optimal temperatureNot Available
Temperature rangepsychrotolerant
Habitatdeep sea; Iheya Ridge hydrothermal vent field of Okinawa Trough
Biotic relationshipNot Available
Host(s)Homo sapiens, Viridiplantae, Triticum aestivum
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNon-pathogenic

Genome Summary

Bacillus mycoides strain DB-1 Ga0227246_172, whole genome shotgun

Gene Summary

Adenine Count

1890671 bp

Thymine Count

1862314 bp

Guanine Count

1046730 bp

Cytosine Count

993919 bp

Genome Length

5794236 bp

Protein-coding Genes

5724 genes

Non-Coding Genes

159 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
atp-binding cassette subfamily c protein cydcDET55_115114Not AvailableNegative3311336 - 331306064325.8
atp-binding cassette subfamily c protein cyddDET55_115115Not AvailableNegative3313057 - 331477864314.9
cytochrome bd-i ubiquinol oxidase subunit 2 apoproteinDET55_115116Not AvailableNegative3314778 - 331579438032.6
cytochrome bd-i ubiquinol oxidase subunit 1 apoproteinDET55_115117Not AvailableNegative3315781 - 331718453008.9
alkanesulfonate monooxygenase ssud/methylene tetrahydromethanopterin reductase-like flavin-dependent oxidoreductase (luciferase family)DET55_115118Not AvailableNegative3317810 - 331886538583.1
glyoxalase family proteinDET55_115119Not AvailableNegative3318882 - 331982335805.2
marr family transcriptional regulatorDET55_115120Not AvailableNegative3319876 - 332031917241.8
4-carboxymuconolactone decarboxylaseDET55_115121Not AvailableNegative3320421 - 332074112145.8
tautomerase-like proteinDET55_115122Not AvailableNegative3320741 - 332115115948.1
uncharacterized protein duf4865DET55_115123Not AvailableNegative3321197 - 332174221089.2

Displaying genes 3341 – 3350 of 5883 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

Health ConditionRelationReference
Food poisoningCausesPMC6842932
EmesisCausesPMC2783214

Displaying health effects 1 – 2 of 2 in total