Bacillus mycoides str. DB-1

Gram-positiveRodFacultative anaerobe

Kingdom

Bacillati

Phylum

Bacillota

Class

Bacilli

Order

Caryophanales

Family

Bacillaceae

Genus

Bacillus

Description

Bacillus mycoides strain DB-1 is a Gram-positive, rod-shaped bacterium that has been isolated from the deep sea, specifically from the Iheya Ridge hydrothermal vent field in the Okinawa Trough. As a facultative anaerobe, this microbe is capable of surviving in both aerobic and anaerobic environments, which may confer an ecological advantage in the extreme conditions typically found at hydrothermal vents, where oxygen levels can fluctuate significantly. The habitat of Bacillus mycoides str. DB-1 suggests its potential involvement in biogeochemical cycles within deep-sea ecosystems, as hydrothermal vents are known to host unique microbial communities that contribute to nutrient cycling under high-pressure and high-temperature conditions. The ability of this strain to thrive in such an environment may indicate its adaptation to utilize diverse energy sources available in the vent ecosystem. Further research into the metabolic pathways and ecological roles of Bacillus mycoides str. DB-1 could provide insights into the microbial dynamics of extreme habitats and their contributions to the overall health and functioning of deep-sea environments.

Taxonomy

KingdomBacillati
PhylumBacillota
ClassBacilli
OrderCaryophanales
FamilyBacillaceae
GenusBacillus
SpeciesBacillus mycoides
StrainDB-1

Profile

Physiology
Gram staining propertiesPositive
ShapeRod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Image of Bacillus mycoides str. DB-1
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsFacultative anaerobe
Optimal temperatureNot Available
Temperature rangepsychrotolerant
Habitatdeep sea; Iheya Ridge hydrothermal vent field of Okinawa Trough
Biotic relationshipNot Available
Host(s)Homo sapiens, Viridiplantae, Triticum aestivum
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNon-pathogenic

Genome Summary

Bacillus mycoides strain DB-1 Ga0227246_172, whole genome shotgun

Gene Summary

Adenine Count

1890671 bp

Thymine Count

1862314 bp

Guanine Count

1046730 bp

Cytosine Count

993919 bp

Genome Length

5794236 bp

Protein-coding Genes

5724 genes

Non-Coding Genes

159 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
histidinol-phosphatase (php family)DET55_112127Not AvailableNegative2911495 - 291251439705.3
phosphoribosyl-atp pyrophosphataseDET55_112128Not AvailableNegative2912527 - 291285012587.2
phosphoribosyl-amp cyclohydrolaseDET55_112129Not AvailableNegative2912861 - 291316611539.9
imidazole glycerol phosphate synthase subunit hisfDET55_112130Not AvailableNegative2913163 - 291392126909.4
1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomeraseDET55_112131Not AvailableNegative2913915 - 291463426059.1
glutamine amidotransferaseDET55_112132Not AvailableNegative2914607 - 291523623141.4
imidazoleglycerol-phosphate dehydrataseDET55_112133Not AvailableNegative2915237 - 291582121464.4
histidinol dehydrogenaseDET55_112134Not AvailableNegative2915821 - 291711047282.7
atp phosphoribosyltransferase catalytic subunitDET55_112135Not AvailableNegative2917123 - 291778824785.6
atp phosphoribosyltransferase regulatory subunitDET55_112136Not AvailableNegative2917734 - 291899648809.1

Displaying genes 2941 – 2950 of 5883 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

Health ConditionRelationReference
Food poisoningCausesPMC6842932
EmesisCausesPMC2783214

Displaying health effects 1 – 2 of 2 in total