Ruminococcus sp. XPD3002

Gram-positiveCocciNon-motileAnaerobe

Kingdom

Bacillati

Phylum

Bacillota

Class

Clostridia

Order

Eubacteriales

Family

Oscillospiraceae

Genus

Ruminococcus

Description

Ruminococcus sp. XPD3002 is a Gram-positive, nonsporulating coccus that thrives as an anaerobic, chemoheterotrophic organism, primarily residing in the intestinal microflora of animals. This microbe exhibits an optimal growth temperature of 39.0°C, suggesting a preference for the warm, stable environment typically found in the intestines of host organisms. As a member of the gut microbiota, Ruminococcus sp. XPD3002 plays a critical role in the digestion of complex carbohydrates, contributing to the overall metabolic processes within the intestinal ecosystem. Its ability to function in an anaerobic environment aligns with the conditions prevalent in the intestines, where oxygen levels are generally low. The presence of Ruminococcus sp. XPD3002 in the gut may support the fermentation of dietary fibers, resulting in the production of short-chain fatty acids, which are beneficial for both host health and microbial community dynamics. This species underscores the importance of anaerobic, chemoheterotrophic bacteria in maintaining gut health and facilitating nutrient absorption in animal hosts, highlighting the intricate relationships between host organisms and their resident microbial communities.

Taxonomy

KingdomBacillati
PhylumBacillota
ClassClostridia
OrderEubacteriales
FamilyOscillospiraceae
GenusRuminococcus
SpeciesRuminococcus sp. XPD3002
StrainNo strain

Profile

Physiology
Gram staining propertiesPositive
ShapeCocci
MobilityNo
Flagellar presenceYes
Number of membranesNot Available
Image of Ruminococcus sp. XPD3002
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsAnaerobe
Optimal temperature39
Temperature rangeMesophilic
HabitatAnimal intestinal microflora
Biotic relationshipNot Available
Host(s)Homo sapiens, Bos taurus, Bos
Cell arrangementNot Available
SporulationNonsporulating
Energy sourceChemoheterotroph
PathogenicityNot Available

Genome Summary

Ruminococcus flavefaciens strain XPD3002 genome assembly, contig:

Gene Summary

Adenine Count

1004859 bp

Thymine Count

1005118 bp

Guanine Count

817425 bp

Cytosine Count

810002 bp

Genome Length

3642793 bp

Protein-coding Genes

3109 genes

Non-Coding Genes

138 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
nitrogenase iron protein nifhSAMN04487832_103153Not AvailablePositive941504 - 94235831105.4
hybrid cluster protein-associated redox disulfide domain-containing proteinSAMN04487832_103154Not AvailablePositive942367 - 9425887845.39
hypothetical proteinSAMN04487832_103155Not AvailablePositive942854 - 9429945456.49
hypothetical proteinSAMN04487832_103156Not AvailableNegative943185 - 94369719171.6
Trna-leuNot AvailableNot AvailablePositive943763 - 943847Not Available
hypothetical proteinSAMN04487832_103158Not AvailableNegative943913 - 94453321938.6
dna mismatch repair protein muts2SAMN04487832_103159Not AvailableNegative944811 - 94720188801.8
dna replication and repair protein recoSAMN04487832_103160Not AvailableNegative947230 - 94797328136.8
gtp-binding protein eraSAMN04487832_103161Not AvailableNegative948443 - 94933633267.6
probable rrna maturation factorSAMN04487832_103162Not AvailableNegative949339 - 94984818963.7

Displaying genes 871 – 880 of 3247 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.