Ruminococcus sp. XPD3002

Gram-positiveCocciNon-motileAnaerobe

Kingdom

Bacillati

Phylum

Bacillota

Class

Clostridia

Order

Eubacteriales

Family

Oscillospiraceae

Genus

Ruminococcus

Description

Ruminococcus sp. XPD3002 is a Gram-positive, nonsporulating coccus that thrives as an anaerobic, chemoheterotrophic organism, primarily residing in the intestinal microflora of animals. This microbe exhibits an optimal growth temperature of 39.0°C, suggesting a preference for the warm, stable environment typically found in the intestines of host organisms. As a member of the gut microbiota, Ruminococcus sp. XPD3002 plays a critical role in the digestion of complex carbohydrates, contributing to the overall metabolic processes within the intestinal ecosystem. Its ability to function in an anaerobic environment aligns with the conditions prevalent in the intestines, where oxygen levels are generally low. The presence of Ruminococcus sp. XPD3002 in the gut may support the fermentation of dietary fibers, resulting in the production of short-chain fatty acids, which are beneficial for both host health and microbial community dynamics. This species underscores the importance of anaerobic, chemoheterotrophic bacteria in maintaining gut health and facilitating nutrient absorption in animal hosts, highlighting the intricate relationships between host organisms and their resident microbial communities.

Taxonomy

KingdomBacillati
PhylumBacillota
ClassClostridia
OrderEubacteriales
FamilyOscillospiraceae
GenusRuminococcus
SpeciesRuminococcus sp. XPD3002
StrainNo strain

Profile

Physiology
Gram staining propertiesPositive
ShapeCocci
MobilityNo
Flagellar presenceYes
Number of membranesNot Available
Image of Ruminococcus sp. XPD3002
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsAnaerobe
Optimal temperature39
Temperature rangeMesophilic
HabitatAnimal intestinal microflora
Biotic relationshipNot Available
Host(s)Homo sapiens, Bos taurus, Bos
Cell arrangementNot Available
SporulationNonsporulating
Energy sourceChemoheterotroph
PathogenicityNot Available

Genome Summary

Ruminococcus flavefaciens strain XPD3002 genome assembly, contig:

Gene Summary

Adenine Count

1004859 bp

Thymine Count

1005118 bp

Guanine Count

817425 bp

Cytosine Count

810002 bp

Genome Length

3642793 bp

Protein-coding Genes

3109 genes

Non-Coding Genes

138 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
nucleoside-diphosphate-sugar epimeraseSAMN04487832_101161Not AvailablePositive202755 - 20365434826.2
predicted component of the ribosome quality control (rqc) complex, yloa/tae2 family, contains fibronectin-binding (fbpa) and duf814 domainsSAMN04487832_101162Not AvailablePositive203667 - 20542165870.1
dna-3-methyladenine glycosylaseSAMN04487832_101163Not AvailablePositive205421 - 20593919539.4
arac family transcriptional regulator, arabinose operon regulatory proteinSAMN04487832_101164Not AvailablePositive205936 - 20671229591.3
hypothetical proteinSAMN04487832_101165Not AvailablePositive206772 - 20827458205.9
hypothetical proteinSAMN04487832_101166Not AvailableNegative208368 - 2086259861.42
haloacid dehalogenase superfamily, subfamily ia, variant 3 with third motif having dd or edSAMN04487832_101167Not AvailableNegative208618 - 20928024830.8
starch synthaseSAMN04487832_101168Not AvailableNegative209381 - 21083556053.8
exodeoxyribonuclease-3SAMN04487832_101169Not AvailableNegative211024 - 21177028753.8
phage shock protein a (pspa) family proteinSAMN04487832_101170Not AvailablePositive212178 - 21289726466.1

Displaying genes 281 – 290 of 3247 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.