Ruminococcus sp. XPD3002

Gram-positiveCocciNon-motileAnaerobe

Kingdom

Bacillati

Phylum

Bacillota

Class

Clostridia

Order

Eubacteriales

Family

Oscillospiraceae

Genus

Ruminococcus

Description

Ruminococcus sp. XPD3002 is a Gram-positive, nonsporulating coccus that thrives as an anaerobic, chemoheterotrophic organism, primarily residing in the intestinal microflora of animals. This microbe exhibits an optimal growth temperature of 39.0°C, suggesting a preference for the warm, stable environment typically found in the intestines of host organisms. As a member of the gut microbiota, Ruminococcus sp. XPD3002 plays a critical role in the digestion of complex carbohydrates, contributing to the overall metabolic processes within the intestinal ecosystem. Its ability to function in an anaerobic environment aligns with the conditions prevalent in the intestines, where oxygen levels are generally low. The presence of Ruminococcus sp. XPD3002 in the gut may support the fermentation of dietary fibers, resulting in the production of short-chain fatty acids, which are beneficial for both host health and microbial community dynamics. This species underscores the importance of anaerobic, chemoheterotrophic bacteria in maintaining gut health and facilitating nutrient absorption in animal hosts, highlighting the intricate relationships between host organisms and their resident microbial communities.

Taxonomy

KingdomBacillati
PhylumBacillota
ClassClostridia
OrderEubacteriales
FamilyOscillospiraceae
GenusRuminococcus
SpeciesRuminococcus sp. XPD3002
StrainNo strain

Profile

Physiology
Gram staining propertiesPositive
ShapeCocci
MobilityNo
Flagellar presenceYes
Number of membranesNot Available
Image of Ruminococcus sp. XPD3002
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsAnaerobe
Optimal temperature39
Temperature rangeMesophilic
HabitatAnimal intestinal microflora
Biotic relationshipNot Available
Host(s)Homo sapiens, Bos taurus, Bos
Cell arrangementNot Available
SporulationNonsporulating
Energy sourceChemoheterotroph
PathogenicityNot Available

Genome Summary

Ruminococcus flavefaciens strain XPD3002 genome assembly, contig:

Gene Summary

Adenine Count

1004859 bp

Thymine Count

1005118 bp

Guanine Count

817425 bp

Cytosine Count

810002 bp

Genome Length

3642793 bp

Protein-coding Genes

3109 genes

Non-Coding Genes

138 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
act domain-containing proteinSAMN04487832_10191Not AvailablePositive114534 - 1148039808.14
hypothetical proteinSAMN04487832_10192Not AvailablePositive114835 - 11619347155.6
hypothetical proteinSAMN04487832_10193Not AvailablePositive116322 - 11660610402.0
ser/thr protein kinase rdoa involved in cpx stress response, mazf antagonistSAMN04487832_10194Not AvailablePositive116644 - 11763937182.5
phosphoribosylformylglycinamidine synthaseSAMN04487832_10195Not AvailableNegative117796 - 121500135822.0
threonylcarbamoyladenosine trna methylthiotransferase mtabSAMN04487832_10196Not AvailableNegative121534 - 12283849091.8
pts hpr component phosphorylation siteSAMN04487832_10197Not AvailablePositive123123 - 1233538648.45
hypothetical proteinSAMN04487832_10198Not AvailablePositive123516 - 1237348015.0
hypothetical proteinSAMN04487832_10199Not AvailablePositive124027 - 127608132953.0
ph domain-containing proteinSAMN04487832_101100Not AvailableNegative127825 - 12840922075.1

Displaying genes 211 – 220 of 3247 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.