Ruminococcus sp. XPD3002

Gram-positiveCocciNon-motileAnaerobe

Kingdom

Bacillati

Phylum

Bacillota

Class

Clostridia

Order

Eubacteriales

Family

Oscillospiraceae

Genus

Ruminococcus

Description

Ruminococcus sp. XPD3002 is a Gram-positive, nonsporulating coccus that thrives as an anaerobic, chemoheterotrophic organism, primarily residing in the intestinal microflora of animals. This microbe exhibits an optimal growth temperature of 39.0°C, suggesting a preference for the warm, stable environment typically found in the intestines of host organisms. As a member of the gut microbiota, Ruminococcus sp. XPD3002 plays a critical role in the digestion of complex carbohydrates, contributing to the overall metabolic processes within the intestinal ecosystem. Its ability to function in an anaerobic environment aligns with the conditions prevalent in the intestines, where oxygen levels are generally low. The presence of Ruminococcus sp. XPD3002 in the gut may support the fermentation of dietary fibers, resulting in the production of short-chain fatty acids, which are beneficial for both host health and microbial community dynamics. This species underscores the importance of anaerobic, chemoheterotrophic bacteria in maintaining gut health and facilitating nutrient absorption in animal hosts, highlighting the intricate relationships between host organisms and their resident microbial communities.

Taxonomy

KingdomBacillati
PhylumBacillota
ClassClostridia
OrderEubacteriales
FamilyOscillospiraceae
GenusRuminococcus
SpeciesRuminococcus sp. XPD3002
StrainNo strain

Profile

Physiology
Gram staining propertiesPositive
ShapeCocci
MobilityNo
Flagellar presenceYes
Number of membranesNot Available
Image of Ruminococcus sp. XPD3002
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsAnaerobe
Optimal temperature39
Temperature rangeMesophilic
HabitatAnimal intestinal microflora
Biotic relationshipNot Available
Host(s)Homo sapiens, Bos taurus, Bos
Cell arrangementNot Available
SporulationNonsporulating
Energy sourceChemoheterotroph
PathogenicityNot Available

Genome Summary

Ruminococcus flavefaciens strain XPD3002 genome assembly, contig:

Gene Summary

Adenine Count

1004859 bp

Thymine Count

1005118 bp

Guanine Count

817425 bp

Cytosine Count

810002 bp

Genome Length

3642793 bp

Protein-coding Genes

3109 genes

Non-Coding Genes

138 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
16s ribosomal rna . bacterial ssuNot AvailableNot AvailablePositive78973 - 7912818.01
2-c-methyl-d-erythritol 2,4-cyclodiphosphate synthaseSAMN04487832_10162Not AvailablePositive79468 - 7995017024.8
mannan endo-1,4-beta-mannosidaseSAMN04487832_10163Not AvailablePositive80585 - 8250171050.9
his kinase a (phospho-acceptor) domain-containing proteinSAMN04487832_10164Not AvailableNegative82757 - 8467970916.4
dna-binding response regulator, ompr family, contains rec and winged-helix (whth) domainSAMN04487832_10165Not AvailableNegative84693 - 8540626714.8
hypothetical proteinSAMN04487832_10166Not AvailablePositive85669 - 8637627196.4
stage v sporulation protein acSAMN04487832_10167Not AvailablePositive87218 - 8766114965.3
ig-like domain (group 2)SAMN04487832_10168Not AvailablePositive87989 - 8951853124.6
gdsl-like lipase/acylhydrolase family proteinSAMN04487832_10169Not AvailablePositive89546 - 9059838954.4
abc-type glycerol-3-phosphate transport system, substrate-binding proteinSAMN04487832_10170Not AvailableNegative90651 - 9202450525.9

Displaying genes 181 – 190 of 3247 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.