Ruminococcus sp. YRD2003

Gram-positiveCocciNon-motileAnaerobe

Kingdom

Bacillati

Phylum

Bacillota

Class

Clostridia

Order

Eubacteriales

Family

Oscillospiraceae

Genus

Ruminococcus

Description

Ruminococcus sp. YRD2003 is a Gram-positive, nonsporulating coccus that thrives in anaerobic conditions and is primarily found in the intestinal microflora of animals. This bacterium demonstrates a chemoheterotrophic metabolism, utilizing organic compounds as both carbon and energy sources, which is typical of many gut microbiota involved in the fermentation of dietary fibers and other substrates. Optimal growth for Ruminococcus sp. YRD2003 occurs at approximately 39.0°C, suggesting a preference for the warm environment typical of the animal intestines. The presence of this microbe in the gut highlights its potential role in the digestion process, particularly in the breakdown of complex carbohydrates, thereby contributing to the overall health and functionality of the host's digestive system. The ecological significance of Ruminococcus sp. YRD2003 lies in its potential contributions to the maintenance of gut homeostasis and its interactions with other microbial populations within the intestinal ecosystem. Understanding its specific functions and interactions could provide insights into the broader dynamics of gut microbiota and their implications for host health and nutrition.

Taxonomy

KingdomBacillati
PhylumBacillota
ClassClostridia
OrderEubacteriales
FamilyOscillospiraceae
GenusRuminococcus
SpeciesRuminococcus sp. YRD2003
StrainNo strain

Profile

Physiology
Gram staining propertiesPositive
ShapeCocci
MobilityNo
Flagellar presenceYes
Number of membranesNot Available
Image of Ruminococcus sp. YRD2003
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsAnaerobe
Optimal temperature39
Temperature rangeMesophilic
HabitatAnimal intestinal microflora
Biotic relationshipNot Available
Host(s)Homo sapiens, Bos taurus, Bos
Cell arrangementNot Available
SporulationNonsporulating
Energy sourceChemoheterotroph
PathogenicityNot Available

Genome Summary

Ruminococcus flavefaciens strain YRD2003 genome assembly, contig:

Gene Summary

Adenine Count

886534 bp

Thymine Count

905752 bp

Guanine Count

874295 bp

Cytosine Count

891534 bp

Genome Length

3560550 bp

Protein-coding Genes

3001 genes

Non-Coding Genes

113 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
diguanylate cyclase (ggdef) domain-containing proteinSAMN02910353_00417Not AvailablePositive458094 - 46001371996.4
edd domain protein, degv familySAMN02910353_00418Not AvailableNegative460128 - 46100932092.6
methionyl-trna synthetaseSAMN02910353_00419Not AvailablePositive461243 - 46326177341.2
glutamyl-trna synthetaseSAMN02910353_00420Not AvailableNegative463330 - 46477854443.1
asparagine synthase (glutamine-hydrolysing)SAMN02910353_00421Not AvailableNegative464797 - 46633559276.3
glycerol-3-phosphate dehydrogenase (nad(p)+)SAMN02910353_00422Not AvailableNegative466350 - 46734235397.2
glycerol-3-phosphate acyltransferase plsySAMN02910353_00423Not AvailableNegative467360 - 46803424204.5
gtp-binding proteinSAMN02910353_00424Not AvailableNegative468034 - 46936249661.3
cell wall assembly regulator smi1SAMN02910353_00425Not AvailableNegative469391 - 47002323448.6
trax proteinSAMN02910353_00426Not AvailableNegative470034 - 47081030356.3

Displaying genes 501 – 510 of 3114 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.