Ruminococcus sp. YRD2003

Gram-positiveCocciNon-motileAnaerobe

Kingdom

Bacillati

Phylum

Bacillota

Class

Clostridia

Order

Eubacteriales

Family

Oscillospiraceae

Genus

Ruminococcus

Description

Ruminococcus sp. YRD2003 is a Gram-positive, nonsporulating coccus that thrives in anaerobic conditions and is primarily found in the intestinal microflora of animals. This bacterium demonstrates a chemoheterotrophic metabolism, utilizing organic compounds as both carbon and energy sources, which is typical of many gut microbiota involved in the fermentation of dietary fibers and other substrates. Optimal growth for Ruminococcus sp. YRD2003 occurs at approximately 39.0°C, suggesting a preference for the warm environment typical of the animal intestines. The presence of this microbe in the gut highlights its potential role in the digestion process, particularly in the breakdown of complex carbohydrates, thereby contributing to the overall health and functionality of the host's digestive system. The ecological significance of Ruminococcus sp. YRD2003 lies in its potential contributions to the maintenance of gut homeostasis and its interactions with other microbial populations within the intestinal ecosystem. Understanding its specific functions and interactions could provide insights into the broader dynamics of gut microbiota and their implications for host health and nutrition.

Taxonomy

KingdomBacillati
PhylumBacillota
ClassClostridia
OrderEubacteriales
FamilyOscillospiraceae
GenusRuminococcus
SpeciesRuminococcus sp. YRD2003
StrainNo strain

Profile

Physiology
Gram staining propertiesPositive
ShapeCocci
MobilityNo
Flagellar presenceYes
Number of membranesNot Available
Image of Ruminococcus sp. YRD2003
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsAnaerobe
Optimal temperature39
Temperature rangeMesophilic
HabitatAnimal intestinal microflora
Biotic relationshipNot Available
Host(s)Homo sapiens, Bos taurus, Bos
Cell arrangementNot Available
SporulationNonsporulating
Energy sourceChemoheterotroph
PathogenicityNot Available

Genome Summary

Ruminococcus flavefaciens strain YRD2003 genome assembly, contig:

Gene Summary

Adenine Count

886534 bp

Thymine Count

905752 bp

Guanine Count

874295 bp

Cytosine Count

891534 bp

Genome Length

3560550 bp

Protein-coding Genes

3001 genes

Non-Coding Genes

113 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
haloacid dehalogenase superfamily, subfamily ia, variant 3 with third motif having dd or edSAMN02910353_02492Not AvailablePositive2877391 - 287805024571.5
hypothetical proteinSAMN02910353_02493Not AvailablePositive2878054 - 287831710110.7
protein of unknown functionSAMN02910353_02494Not AvailablePositive2878678 - 288024353707.5
ca-activated chloride channel family proteinSAMN02910353_02495Not AvailableNegative2880419 - 288213162717.3
hypothetical proteinSAMN02910353_02496Not AvailableNegative2882128 - 288280224947.0
d-alanyl-d-alanine carboxypeptidase (penicillin-binding protein 5/6)SAMN02910353_02497Not AvailablePositive2883269 - 288468152801.3
n-acetylmuramoyl-l-alanine amidaseSAMN02910353_02498Not AvailableNegative2884726 - 288546326658.5
cubico group peptidase, beta-lactamase class c familySAMN02910353_02499Not AvailableNegative2885546 - 288669742159.5
protein of unknown functionSAMN02910353_02500Not AvailableNegative2886700 - 28869578713.77
diguanylate cyclase (ggdef) domain-containing proteinSAMN02910353_02501Not AvailableNegative2886964 - 288891674492.1

Displaying genes 2521 – 2530 of 3114 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.