Ruminococcus sp. YRD2003

Gram-positiveCocciNon-motileAnaerobe

Kingdom

Bacillati

Phylum

Bacillota

Class

Clostridia

Order

Eubacteriales

Family

Oscillospiraceae

Genus

Ruminococcus

Description

Ruminococcus sp. YRD2003 is a Gram-positive, nonsporulating coccus that thrives in anaerobic conditions and is primarily found in the intestinal microflora of animals. This bacterium demonstrates a chemoheterotrophic metabolism, utilizing organic compounds as both carbon and energy sources, which is typical of many gut microbiota involved in the fermentation of dietary fibers and other substrates. Optimal growth for Ruminococcus sp. YRD2003 occurs at approximately 39.0°C, suggesting a preference for the warm environment typical of the animal intestines. The presence of this microbe in the gut highlights its potential role in the digestion process, particularly in the breakdown of complex carbohydrates, thereby contributing to the overall health and functionality of the host's digestive system. The ecological significance of Ruminococcus sp. YRD2003 lies in its potential contributions to the maintenance of gut homeostasis and its interactions with other microbial populations within the intestinal ecosystem. Understanding its specific functions and interactions could provide insights into the broader dynamics of gut microbiota and their implications for host health and nutrition.

Taxonomy

KingdomBacillati
PhylumBacillota
ClassClostridia
OrderEubacteriales
FamilyOscillospiraceae
GenusRuminococcus
SpeciesRuminococcus sp. YRD2003
StrainNo strain

Profile

Physiology
Gram staining propertiesPositive
ShapeCocci
MobilityNo
Flagellar presenceYes
Number of membranesNot Available
Image of Ruminococcus sp. YRD2003
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsAnaerobe
Optimal temperature39
Temperature rangeMesophilic
HabitatAnimal intestinal microflora
Biotic relationshipNot Available
Host(s)Homo sapiens, Bos taurus, Bos
Cell arrangementNot Available
SporulationNonsporulating
Energy sourceChemoheterotroph
PathogenicityNot Available

Genome Summary

Ruminococcus flavefaciens strain YRD2003 genome assembly, contig:

Gene Summary

Adenine Count

886534 bp

Thymine Count

905752 bp

Guanine Count

874295 bp

Cytosine Count

891534 bp

Genome Length

3560550 bp

Protein-coding Genes

3001 genes

Non-Coding Genes

113 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
radical sam additional 4fe4s-binding spasm domain-containing proteinSAMN02910353_02237Not AvailablePositive2551381 - 255236137292.7
hypothetical proteinSAMN02910353_02238Not AvailablePositive2552358 - 255309225815.9
diguanylate cyclase (ggdef) domain-containing proteinSAMN02910353_02239Not AvailableNegative2553311 - 255501765403.7
indolepyruvate ferredoxin oxidoreductase alpha subunitSAMN02910353_02240Not AvailablePositive2555517 - 255736465937.4
indolepyruvate ferredoxin oxidoreductase beta subunitSAMN02910353_02241Not AvailablePositive2557357 - 255792920525.3
phenylacetate-coa ligaseSAMN02910353_02242Not AvailablePositive2557951 - 255918646069.8
magnesium transporterSAMN02910353_02243Not AvailablePositive2559413 - 256033035541.4
hexapeptide repeat of succinyl-transferaseSAMN02910353_02244Not AvailablePositive2560391 - 256095420242.4
hypothetical proteinSAMN02910353_02245Not AvailablePositive2560954 - 25611156054.41
hypothetical proteinSAMN02910353_02246Not AvailablePositive2561084 - 256145214422.1

Displaying genes 2271 – 2280 of 3114 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.