Ruminococcus sp. YRD2003

Gram-positiveCocciNon-motileAnaerobe

Kingdom

Bacillati

Phylum

Bacillota

Class

Clostridia

Order

Eubacteriales

Family

Oscillospiraceae

Genus

Ruminococcus

Description

Ruminococcus sp. YRD2003 is a Gram-positive, nonsporulating coccus that thrives in anaerobic conditions and is primarily found in the intestinal microflora of animals. This bacterium demonstrates a chemoheterotrophic metabolism, utilizing organic compounds as both carbon and energy sources, which is typical of many gut microbiota involved in the fermentation of dietary fibers and other substrates. Optimal growth for Ruminococcus sp. YRD2003 occurs at approximately 39.0°C, suggesting a preference for the warm environment typical of the animal intestines. The presence of this microbe in the gut highlights its potential role in the digestion process, particularly in the breakdown of complex carbohydrates, thereby contributing to the overall health and functionality of the host's digestive system. The ecological significance of Ruminococcus sp. YRD2003 lies in its potential contributions to the maintenance of gut homeostasis and its interactions with other microbial populations within the intestinal ecosystem. Understanding its specific functions and interactions could provide insights into the broader dynamics of gut microbiota and their implications for host health and nutrition.

Taxonomy

KingdomBacillati
PhylumBacillota
ClassClostridia
OrderEubacteriales
FamilyOscillospiraceae
GenusRuminococcus
SpeciesRuminococcus sp. YRD2003
StrainNo strain

Profile

Physiology
Gram staining propertiesPositive
ShapeCocci
MobilityNo
Flagellar presenceYes
Number of membranesNot Available
Image of Ruminococcus sp. YRD2003
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsAnaerobe
Optimal temperature39
Temperature rangeMesophilic
HabitatAnimal intestinal microflora
Biotic relationshipNot Available
Host(s)Homo sapiens, Bos taurus, Bos
Cell arrangementNot Available
SporulationNonsporulating
Energy sourceChemoheterotroph
PathogenicityNot Available

Genome Summary

Ruminococcus flavefaciens strain YRD2003 genome assembly, contig:

Gene Summary

Adenine Count

886534 bp

Thymine Count

905752 bp

Guanine Count

874295 bp

Cytosine Count

891534 bp

Genome Length

3560550 bp

Protein-coding Genes

3001 genes

Non-Coding Genes

113 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
glycosyl hydrolase family 26SAMN02910353_02105Not AvailableNegative2403340 - 240542776550.5
hypothetical proteinSAMN02910353_02106Not AvailableNegative2405785 - 240606910745.9
protein of unknown functionSAMN02910353_02107Not AvailableNegative2406171 - 240771856401.6
abc-type uncharacterized transport systemSAMN02910353_02108Not AvailableNegative2407715 - 240933158833.6
abc-2 type transport system permease proteinSAMN02910353_02109Not AvailableNegative2409357 - 241006126241.8
abc-2 type transport system atp-binding proteinSAMN02910353_02110Not AvailableNegative2410061 - 241119742044.9
riboflavin kinase / fmn adenylyltransferaseSAMN02910353_02111Not AvailableNegative2411386 - 241227331856.9
trna pseudouridine55 synthaseSAMN02910353_02112Not AvailableNegative2412277 - 241317032512.2
phosphoesterase recj domain-containing proteinSAMN02910353_02113Not AvailableNegative2413170 - 241412034968.2
ribosome-binding factor aSAMN02910353_02114Not AvailableNegative2414305 - 241464312816.7

Displaying genes 2141 – 2150 of 3114 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.