Ruminococcus sp. YRD2003

Gram-positiveCocciNon-motileAnaerobe

Kingdom

Bacillati

Phylum

Bacillota

Class

Clostridia

Order

Eubacteriales

Family

Oscillospiraceae

Genus

Ruminococcus

Description

Ruminococcus sp. YRD2003 is a Gram-positive, nonsporulating coccus that thrives in anaerobic conditions and is primarily found in the intestinal microflora of animals. This bacterium demonstrates a chemoheterotrophic metabolism, utilizing organic compounds as both carbon and energy sources, which is typical of many gut microbiota involved in the fermentation of dietary fibers and other substrates. Optimal growth for Ruminococcus sp. YRD2003 occurs at approximately 39.0°C, suggesting a preference for the warm environment typical of the animal intestines. The presence of this microbe in the gut highlights its potential role in the digestion process, particularly in the breakdown of complex carbohydrates, thereby contributing to the overall health and functionality of the host's digestive system. The ecological significance of Ruminococcus sp. YRD2003 lies in its potential contributions to the maintenance of gut homeostasis and its interactions with other microbial populations within the intestinal ecosystem. Understanding its specific functions and interactions could provide insights into the broader dynamics of gut microbiota and their implications for host health and nutrition.

Taxonomy

KingdomBacillati
PhylumBacillota
ClassClostridia
OrderEubacteriales
FamilyOscillospiraceae
GenusRuminococcus
SpeciesRuminococcus sp. YRD2003
StrainNo strain

Profile

Physiology
Gram staining propertiesPositive
ShapeCocci
MobilityNo
Flagellar presenceYes
Number of membranesNot Available
Image of Ruminococcus sp. YRD2003
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsAnaerobe
Optimal temperature39
Temperature rangeMesophilic
HabitatAnimal intestinal microflora
Biotic relationshipNot Available
Host(s)Homo sapiens, Bos taurus, Bos
Cell arrangementNot Available
SporulationNonsporulating
Energy sourceChemoheterotroph
PathogenicityNot Available

Genome Summary

Ruminococcus flavefaciens strain YRD2003 genome assembly, contig:

Gene Summary

Adenine Count

886534 bp

Thymine Count

905752 bp

Guanine Count

874295 bp

Cytosine Count

891534 bp

Genome Length

3560550 bp

Protein-coding Genes

3001 genes

Non-Coding Genes

113 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
transglutaminase-like superfamily proteinSAMN02910353_01793Not AvailableNegative2075470 - 2078181102004.0
protein of unknown function duf58SAMN02910353_01794Not AvailableNegative2078193 - 207939245383.8
moxr-like atpaseSAMN02910353_01795Not AvailableNegative2079396 - 208035535104.6
leucine rich repeat-containing proteinSAMN02910353_01796Not AvailablePositive2080522 - 208172741781.1
putative pyruvate formate lyase activating enzymeSAMN02910353_01797Not AvailablePositive2081708 - 208261633470.7
glycosidaseSAMN02910353_01798Not AvailableNegative2082653 - 208425161432.1
hd domain-containing proteinSAMN02910353_01799Not AvailableNegative2084327 - 208492922948.1
acetyltransferase (gnat) family proteinSAMN02910353_01800Not AvailableNegative2085142 - 208588828341.8
putative endonucleaseSAMN02910353_01801Not AvailableNegative2085893 - 208622212031.3
uncharacterized proteinSAMN02910353_01802Not AvailableNegative2086222 - 208849883872.4

Displaying genes 1831 – 1840 of 3114 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.