Pediococcus pentosaceus

Gram-positiveCocciNon-motileFacultative anaerobe

Kingdom

Bacillati

Phylum

Bacillota

Class

Bacilli

Order

Lactobacillales

Family

Lactobacillaceae

Genus

Pediococcus

Description

Pediococcus pentosaceus is a Gram-positive coccus that typically forms tetrads and is characterized by its non-motile nature, lacking flagella. This bacterium is classified as a facultative anaerobe, allowing it to thrive in both aerobic and anaerobic environments. Optimal growth occurs at a temperature of 30°C, categorizing it as mesophilic. Pediococcus pentosaceus exhibits a simple cellular structure with a single membrane and possesses two replicons within its genome, as indicated by accessions JQBF00000000.1 and UGSX00000000.1. It is known to inhabit multiple environments, reflecting its versatility as a free-living organism. The ability to grow under varying oxygen conditions and its mesophilic nature suggest that it may play a role in diverse ecological niches, potentially contributing to fermentation processes in various habitats. The presence of this species in different environments highlights its ecological adaptability and potential applications in food fermentation and preservation.

Taxonomy

KingdomBacillati
PhylumBacillota
ClassBacilli
OrderLactobacillales
FamilyLactobacillaceae
GenusPediococcus
SpeciesPediococcus pentosaceus
StrainNo strain

Profile

Physiology
Gram staining propertiesPositive
ShapeCocci
MobilityNo
Flagellar presenceYes
Number of membranes1
Image of Pediococcus pentosaceus
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsFacultative anaerobe
Optimal temperature30
Temperature rangeMesophilic
HabitatMultiple
Biotic relationshipFree living
Host(s)Homo sapiens, Gallus gallus, Metazoa
Cell arrangementTetrads
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pediococcus pentosaceus strain DSM 20336 Scaffold28, whole genome

Gene Summary

Adenine Count

551519 bp

Thymine Count

540013 bp

Guanine Count

334565 bp

Cytosine Count

313408 bp

Genome Length

1739506 bp

Protein-coding Genes

1648 genes

Non-Coding Genes

55 genes

# of Chromosomes/Plasmids

2

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
acetate kinaseIV86_GL000062Q9X4M1Negative65802 - 6698943759.0
nad-dependent aldehyde dehydrogenaseIV86_GL000063O32507Negative67077 - 6844749888.2
diaminohydroxyphosphoribosylaminopyrimidine deaminase 5-amino-6-(5-phosphoribosylamino)uracil reductaseIV86_GL000064P70814Positive68868 - 6995040624.3
riboflavin synthase subunit alphaIV86_GL000065P50854Positive69951 - 7055621968.6
gtp cyclohydrolase iiIV86_GL000066C5D3N0Positive70546 - 7176044476.2
6,7-dimethyl-8-ribityllumazine synthaseIV86_GL000067Q03D86Positive71761 - 7223116728.2
n-acetylglucosamine and glucose pts, eiicbaIV86_GL000068P09323Positive72516 - 7449570834.2
hypothetical proteinIV86_GL000069Not AvailablePositive74578 - 7492512363.2
transcriptional regulatorIV86_GL000070Not AvailableNegative74988 - 7546117797.5
peptide abc transporter atpaseIV86_GL000071Not AvailablePositive75593 - 7792385003.6

Displaying genes 61 – 70 of 3714 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

95 records
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Compound search
Mass search
Result columns

Structure search compares stored SMILES, InChI, and InChIKey text. Exact mass must match the stored database value.

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Metabolite IDMetabolite nameStructureCAS number
Average massMonoisotopic mass
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm0000272(E)-4-coumarateC9H7O3Chemical structure of (E)-4-coumarateNot available
Average163.1501Da
Monoisotopic163.0395191Da
BASm0000274aldehydo-D-galacturonateC6H9O7Chemical structure of aldehydo-D-galacturonateNot available
Average193.132Da
Monoisotopic193.0353762Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0000400(R)-10-hydroxyoctadecanoateC18H35O3Chemical structure of (R)-10-hydroxyoctadecanoateNot available
Average299.476Da
Monoisotopic299.2591686Da
BASm0000403(S)-acetoinC4H8O2Chemical structure of (S)-acetoinNot available
Average88.1051Da
Monoisotopic88.0524295Da
BASm00008763-hydroxypyruvateC3H3O4Chemical structure of 3-hydroxypyruvateNot available
Average103.054Da
Monoisotopic103.003682157Da

Displaying 1–10 of 95 metabolites

Health Effects

Health ConditionRelationReference
Necrotizing infection of the abdominal wallCausesPMC12859440

Displaying health effects 1 – 1 of 1 in total