Pediococcus acidilactici str. SRCM100320

Gram-positiveCocciNon-motileAnaerobe

Kingdom

Bacillati

Phylum

Bacillota

Class

Bacilli

Order

Lactobacillales

Family

Lactobacillaceae

Genus

Pediococcus

Description

Pediococcus acidilactici strain SRCM100320 is a Gram-positive, nonsporulating coccus that exhibits chemoheterotrophic metabolism and thrives optimally at 30.0°C. This strain is classified as an anaerobe, indicating that it grows in environments devoid of oxygen. Pediococcus acidilactici, as a member of the Lactobacillaceae family, is known to occupy diverse habitats, which may include fermented foods and certain ecological niches within the gastrointestinal tracts of animals. The capacity of P. acidilactici str. SRCM100320 to function as a chemoheterotroph allows it to utilize organic compounds for energy and growth, making it adaptable to various environments where organic substrates are available. Its anaerobic requirement further underscores its ecological role in fermentative processes, particularly in environments where oxygen is limited. Understanding the metabolic capabilities and growth conditions of Pediococcus acidilactici str. SRCM100320 may provide insights into its potential applications in food fermentation and preservation, as well as its role in microbial ecosystems. The strain's adaptability to multiple habitats suggests that it could play a significant role in nutrient cycling and the maintenance of microbial diversity in anaerobic environments, highlighting its importance in both industrial and ecological contexts.

Taxonomy

KingdomBacillati
PhylumBacillota
ClassBacilli
OrderLactobacillales
FamilyLactobacillaceae
GenusPediococcus
SpeciesPediococcus acidilactici
StrainSRCM100320

Profile

Physiology
Gram staining propertiesPositive
ShapeCocci
MobilityNo
Flagellar presenceYes
Number of membranesNot Available
Image of Pediococcus acidilactici str. SRCM100320
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsAnaerobe
Optimal temperature30
Temperature rangeMesophilic
HabitatMultiple
Biotic relationshipNot Available
Host(s)Homo sapiens, Gallus gallus, Hordeum vulgare
Cell arrangementNot Available
SporulationNonsporulating
Energy sourceChemoheterotroph
PathogenicityNot Available

Genome Summary

Pediococcus acidilactici strain SRCM100320 contig00022, whole

Gene Summary

Adenine Count

596033 bp

Thymine Count

607186 bp

Guanine Count

427968 bp

Cytosine Count

445465 bp

Genome Length

2076652 bp

Protein-coding Genes

949 genes

Non-Coding Genes

101 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
ribosome maturation factor rimmSRCM100320_01891Not AvailableNegative1563077 - 156359219146.1
30s ribosomal protein s16SRCM100320_01892Not AvailableNegative1563669 - 156394110324.7
signal recognition particle proteinSRCM100320_01893Not AvailableNegative1564054 - 156548753285.3
upf0122 proteinSRCM100320_01894Not AvailableNegative1565504 - 156584513704.1
signal recognition particle receptor ftsySRCM100320_01895Not AvailableNegative1565851 - 156700842421.3
chromosome partition protein smcSRCM100320_01896Not AvailableNegative1567009 - 1570563135383.0
ribonuclease iiiSRCM100320_01897Not AvailableNegative1570573 - 157127126674.6
acyl carrier proteinSRCM100320_01898Not AvailableNegative1571373 - 15716159026.34
glycerol-3-phosphate 1-o-acyltransferaseSRCM100320_01899Not AvailableNegative1571657 - 157270037520.0
dna helicaseSRCM100320_01900Not AvailableNegative1572734 - 157476175645.0

Displaying genes 881 – 890 of 1050 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

612 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000232(4S)-perillyl alcoholC10H16OChemical structure of (4S)-perillyl alcoholNot available
Average152.237Da
Monoisotopic152.1201151Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002532-oxopent-4-enoateC5H5O3Chemical structure of 2-oxopent-4-enoateNot available
Average113.093Da
Monoisotopic113.024417601Da
BASm00002543-hydroxy-2-methylpropanoateC4H7O3Chemical structure of 3-hydroxy-2-methylpropanoateNot available
Average103.098Da
Monoisotopic103.0400677Da
BASm00002593alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da
BASm00002634-(hydroxymethyl)benzenesulfonateC7H7O4SChemical structure of 4-(hydroxymethyl)benzenesulfonateNot available
Average187.19Da
Monoisotopic187.007053459Da
BASm0000272(E)-4-coumarateC9H7O3Chemical structure of (E)-4-coumarateNot available
Average163.1501Da
Monoisotopic163.0395191Da
BASm0000277keto-L-sorboseC6H12O6Chemical structure of keto-L-sorboseNot available
Average180.1559Da
Monoisotopic180.0633881Da

Displaying 1–10 of 612 metabolites

Health Effects

Health ConditionRelationReference
Fournier ??s gangreneCausesPMC12859440
Opportunistic infectionsCausesPMC12859440
SepsisCausesPMC12859440
Internal organ infection/abscessesCausesPMC12859440
EndocarditisCausesPMC12859440
Skin infectionsCausesPMC12859440

Displaying health effects 1 – 6 of 6 in total