Flavobacterium columnare

Gram-negativeRodMotilefacultative anaerobe

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Flavobacteriia

Order

Flavobacteriales

Family

Flavobacteriaceae

Genus

Flavobacterium

Description

Flavobacterium columnare is a Gram-negative, rod-shaped bacterium characterized by its motility, which is facilitated by the presence of true flagella. This non-sporulating organism exhibits facultative anaerobic respiration, indicating its ability to thrive in both the presence and absence of oxygen. As a mesophilic microbe, it prefers moderate temperature ranges for optimal growth, reflecting its adaptability to varied environmental conditions. Flavobacterium columnare is classified as a chemoheterotroph, relying on organic compounds for energy and carbon. Its habitat is diverse, suggesting a wide ecological distribution, although specific environments are not detailed in the available data. Notably, this bacterium is recognized for its pathogenicity in fish, which underscores its ecological significance within aquatic ecosystems. The genomic information for Flavobacterium columnare is accessible under accession number OLKH00000000.1, indicating a well-defined genetic framework that could be explored for further understanding of its biology and interactions within its habitat. The presence of a single replicon in its genome reflects a streamlined genetic organization, which may be advantageous for its survival and adaptability in dynamic environments. This bacterium's multifaceted role in aquatic ecology and its impact on fish health highlight the intricate relationships between microorganisms and their hosts in aquatic systems.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassFlavobacteriia
OrderFlavobacteriales
FamilyFlavobacteriaceae
GenusFlavobacterium
SpeciesFlavobacterium columnare
StrainNo strain

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranesNot Available
Image of Flavobacterium columnare
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsfacultative anaerobe
Optimal temperatureNot Available
Temperature rangeMesophilic
HabitatMultiple
Biotic relationshipNot Available
Host(s)Oreochromis niloticus, Oncorhynchus mykiss, catfish
Cell arrangementNot Available
SporulationNonsporulating
Energy sourceChemoheterotroph
Pathogenicityfish

Genome Summary

Flavobacterium columnare isolate CIP109753 genome assembly,

Gene Summary

Adenine Count

1127125 bp

Thymine Count

1130068 bp

Guanine Count

502099 bp

Cytosine Count

496213 bp

Genome Length

3255895 bp

Protein-coding Genes

2709 genes

Non-Coding Genes

77 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
3-oxoadipate enol-lactonase 2FLACOL_01967Not AvailableNegative2310566 - 231133930227.4
corrinoid abc transporter substrate-binding proteinFLACOL_01968Not AvailableNegative2311360 - 231219032426.0
orotidine 5'-phosphate decarboxylaseFLACOL_01969Not AvailableNegative2312221 - 231315935444.8
hypothetical proteinFLACOL_01970Not AvailableNegative2313134 - 231373321741.0
outer membrane porin f precursorFLACOL_01971Not AvailableNegative2313784 - 231581174892.8
peptide chain release factor 1FLACOL_01972Not AvailableNegative2315978 - 231705140491.2
imidazolonepropionaseFLACOL_01973Not AvailableNegative2317250 - 231855147892.6
urease subunit alphaFLACOL_01974Not AvailableNegative2318592 - 2321594113325.0
competence protein commFLACOL_01975Not AvailablePositive2321744 - 232327956792.5
nad-specific glutamate dehydrogenaseFLACOL_01976Not AvailableNegative2323508 - 232473445016.0

Displaying genes 1981 – 1990 of 2786 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

2 records
Metabolite IDMetabolite nameStructureCAS number
BASm0014033AmmoniaH3NChemical structure of Ammonia7664-41-7
Average17.0305Da
Monoisotopic17.026549101Da
BASm0014071ChitinC24H41N3O16Chemical structure of Chitin1398-61-4
Average627.5928Da
Monoisotopic627.248682279Da

Displaying 1–2 of 2 metabolites

Health Effects

Health ConditionRelationReference
Columnaris diseaseCausesPMC11025331
Columnaris diseaseCausesPMC12087154
Columnaris diseaseCausesPMC5395568

Displaying health effects 1 – 3 of 3 in total