Flavobacterium columnare

Gram-negativeRodMotilefacultative anaerobe

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Flavobacteriia

Order

Flavobacteriales

Family

Flavobacteriaceae

Genus

Flavobacterium

Description

Flavobacterium columnare is a Gram-negative, rod-shaped bacterium characterized by its motility, which is facilitated by the presence of true flagella. This non-sporulating organism exhibits facultative anaerobic respiration, indicating its ability to thrive in both the presence and absence of oxygen. As a mesophilic microbe, it prefers moderate temperature ranges for optimal growth, reflecting its adaptability to varied environmental conditions. Flavobacterium columnare is classified as a chemoheterotroph, relying on organic compounds for energy and carbon. Its habitat is diverse, suggesting a wide ecological distribution, although specific environments are not detailed in the available data. Notably, this bacterium is recognized for its pathogenicity in fish, which underscores its ecological significance within aquatic ecosystems. The genomic information for Flavobacterium columnare is accessible under accession number OLKH00000000.1, indicating a well-defined genetic framework that could be explored for further understanding of its biology and interactions within its habitat. The presence of a single replicon in its genome reflects a streamlined genetic organization, which may be advantageous for its survival and adaptability in dynamic environments. This bacterium's multifaceted role in aquatic ecology and its impact on fish health highlight the intricate relationships between microorganisms and their hosts in aquatic systems.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassFlavobacteriia
OrderFlavobacteriales
FamilyFlavobacteriaceae
GenusFlavobacterium
SpeciesFlavobacterium columnare
StrainNo strain

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranesNot Available
Image of Flavobacterium columnare
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsfacultative anaerobe
Optimal temperatureNot Available
Temperature rangeMesophilic
HabitatMultiple
Biotic relationshipNot Available
Host(s)Oreochromis niloticus, Oncorhynchus mykiss, catfish
Cell arrangementNot Available
SporulationNonsporulating
Energy sourceChemoheterotroph
Pathogenicityfish

Genome Summary

Flavobacterium columnare isolate CIP109753 genome assembly,

Gene Summary

Adenine Count

1127125 bp

Thymine Count

1130068 bp

Guanine Count

502099 bp

Cytosine Count

496213 bp

Genome Length

3255895 bp

Protein-coding Genes

2709 genes

Non-Coding Genes

77 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
hypothetical proteinFLACOL_00072Not AvailablePositive100633 - 10197652108.5
hth-type transcriptional regulator immrFLACOL_00073Not AvailablePositive106472 - 10680712728.5
tyrosine recombinase xercFLACOL_00074Not AvailableNegative106875 - 10779835761.1
hypothetical proteinFLACOL_00075Not AvailableNegative109888 - 1101489094.17
plasmid stabilization system proteinFLACOL_00076Not AvailableNegative111628 - 11193011947.6
hypothetical proteinFLACOL_00077Not AvailableNegative111927 - 1121578996.54
hth-type transcriptional regulator immrFLACOL_00078Not AvailableNegative112167 - 11251413216.8
hypothetical proteinFLACOL_00079Not AvailablePositive113685 - 1139368683.0
protoheme ix farnesyltransferaseFLACOL_00080Not AvailablePositive115663 - 11652631977.8
cytochrome c oxidase subunit 3FLACOL_00081Not AvailablePositive116526 - 11710422355.1

Displaying genes 101 – 110 of 2786 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

2 records
Metabolite IDMetabolite nameStructureCAS number
BASm0014033AmmoniaH3NChemical structure of Ammonia7664-41-7
Average17.0305Da
Monoisotopic17.026549101Da
BASm0014071ChitinC24H41N3O16Chemical structure of Chitin1398-61-4
Average627.5928Da
Monoisotopic627.248682279Da

Displaying 1–2 of 2 metabolites

Health Effects

Health ConditionRelationReference
Columnaris diseaseCausesPMC11025331
Columnaris diseaseCausesPMC12087154
Columnaris diseaseCausesPMC5395568

Displaying health effects 1 – 3 of 3 in total