Herbaspirillum seropedicae str. AG215

SpirillaMotileAerobic

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Betaproteobacteria

Order

Burkholderiales

Family

Oxalobacteraceae

Genus

Herbaspirillum

Description

Herbaspirillum seropedicae str. AG215 is a Gram-negative, spirilla-shaped bacterium that exhibits motility via true flagella. This organism is classified as aerobic and thrives in mesophilic conditions, making it well-suited for environments with moderate temperature ranges. H. seropedicae str. AG215 is a free-living microbe primarily found in the rhizosphere, the region of soil directly influenced by plant roots. The bacterium possesses a single replicon within its genome, which is accessible via the accession number SOSE00000000.1. This genomic structure supports its metabolic functions and adaptability within its habitat. The relationship of H. seropedicae str. AG215 with the rhizosphere suggests potential interactions with plant roots, which could influence nutrient cycling and microbial community dynamics in the soil ecosystem. Overall, the traits of Herbaspirillum seropedicae str. AG215 highlight its role as a free-living bacterium in the rhizosphere, where it may contribute to the health and functioning of plant-associated microbial communities.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassBetaproteobacteria
OrderBurkholderiales
FamilyOxalobacteraceae
GenusHerbaspirillum
SpeciesHerbaspirillum seropedicae
StrainAG215

Profile

Physiology
Gram staining propertiesGram-negative
ShapeSpirilla
MobilityYes
Flagellar presenceYes
Number of membranesNot Available
Image of Herbaspirillum seropedicae str. AG215
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsAerobic
Optimal temperatureNot Available
Temperature rangeMesophilic
Habitatrhizosphere
Biotic relationshipFree living
Host(s)Homo sapiens, Triticum aestivum, Oryza sativa
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

UNVERIFIED_ORG: Herbaspirillum seropedicae strain AG215

Gene Summary

Adenine Count

1082353 bp

Thymine Count

1079353 bp

Guanine Count

1807808 bp

Cytosine Count

1813288 bp

Genome Length

5783094 bp

Protein-coding Genes

5031 genes

Non-Coding Genes

92 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
muconate cycloisomeraseDFO49_0888Not AvailablePositive959038 - 96024042442.4
catechol 1,2-dioxygenaseDFO49_0889Not AvailablePositive960291 - 96122633674.9
benzoate 1,2-dioxygenase alpha subunitDFO49_0890Not AvailablePositive961339 - 96271251939.0
benzoate/toluate 1,2-dioxygenase beta subunitDFO49_0891Not AvailablePositive962709 - 96320319544.8
benzoate/toluate 1,2-dioxygenase reductase subunitDFO49_0892Not AvailablePositive963225 - 96425036089.3
dihydroxycyclohexadiene carboxylate dehydrogenaseDFO49_0893Not AvailablePositive964247 - 96503527480.1
enamine deaminase rida (yjgf/yer057c/uk114 family)DFO49_0894Not AvailablePositive965070 - 96548015005.3
aahs family benzoate transporter-like mfs transporterDFO49_0895Not AvailablePositive965579 - 96694648174.4
benzoate membrane transport proteinDFO49_0896Not AvailablePositive967046 - 96821540445.7
50s ribosome-binding gtpaseDFO49_0897Not AvailablePositive968235 - 96950646980.9

Displaying genes 901 – 910 of 5123 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.