Herbaspirillum seropedicae str. AG215

SpirillaMotileAerobic

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Betaproteobacteria

Order

Burkholderiales

Family

Oxalobacteraceae

Genus

Herbaspirillum

Description

Herbaspirillum seropedicae str. AG215 is a Gram-negative, spirilla-shaped bacterium that exhibits motility via true flagella. This organism is classified as aerobic and thrives in mesophilic conditions, making it well-suited for environments with moderate temperature ranges. H. seropedicae str. AG215 is a free-living microbe primarily found in the rhizosphere, the region of soil directly influenced by plant roots. The bacterium possesses a single replicon within its genome, which is accessible via the accession number SOSE00000000.1. This genomic structure supports its metabolic functions and adaptability within its habitat. The relationship of H. seropedicae str. AG215 with the rhizosphere suggests potential interactions with plant roots, which could influence nutrient cycling and microbial community dynamics in the soil ecosystem. Overall, the traits of Herbaspirillum seropedicae str. AG215 highlight its role as a free-living bacterium in the rhizosphere, where it may contribute to the health and functioning of plant-associated microbial communities.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassBetaproteobacteria
OrderBurkholderiales
FamilyOxalobacteraceae
GenusHerbaspirillum
SpeciesHerbaspirillum seropedicae
StrainAG215

Profile

Physiology
Gram staining propertiesGram-negative
ShapeSpirilla
MobilityYes
Flagellar presenceYes
Number of membranesNot Available
Image of Herbaspirillum seropedicae str. AG215
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsAerobic
Optimal temperatureNot Available
Temperature rangeMesophilic
Habitatrhizosphere
Biotic relationshipFree living
Host(s)Homo sapiens, Triticum aestivum, Oryza sativa
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

UNVERIFIED_ORG: Herbaspirillum seropedicae strain AG215

Gene Summary

Adenine Count

1082353 bp

Thymine Count

1079353 bp

Guanine Count

1807808 bp

Cytosine Count

1813288 bp

Genome Length

5783094 bp

Protein-coding Genes

5031 genes

Non-Coding Genes

92 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
membrane protein yqaa with snare-associated domainDFO49_0386Not AvailableNegative415042 - 41553318341.9
l-threonine ammonia-lyaseDFO49_0387Not AvailablePositive415871 - 41740656067.8
7-cyano-7-deazaguanine reductaseDFO49_0388Not AvailablePositive417491 - 41836632456.3
palmitoyl transferaseDFO49_0389Not AvailablePositive418686 - 41930022756.1
phosphotransferase iia-like nitrogen-regulatory protein ptsnDFO49_0390Not AvailablePositive419626 - 42009917119.7
hpr(ser) kinase/phosphataseDFO49_0391Not AvailablePositive420172 - 42111034441.0
upf0042 nucleotide-binding proteinDFO49_0392Not AvailablePositive421200 - 42208432973.6
a/g-specific dna-adenine glycosylaseDFO49_0393Not AvailableNegative422163 - 42330541661.3
dna-(apurinic or apyrimidinic site) lyaseDFO49_0394Not AvailableNegative423302 - 42412330471.0
uncharacterized protein hemyDFO49_0395Not AvailablePositive424347 - 42614966650.5

Displaying genes 421 – 430 of 5123 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.