Desulfovibrio sp.

Gram-negative

Kingdom

Pseudomonadati

Phylum

Thermodesulfobacteriota

Class

Desulfovibrionia

Order

Desulfovibrionales

Family

Desulfovibrionaceae

Genus

Desulfovibrio

Description

Desulfovibrio sp. is a Gram-negative bacterium characterized by the presence of true flagella, which facilitate its motility. This microbe is primarily found in the rumen, an anaerobic environment conducive to its metabolic processes. Desulfovibrio sp. possesses a single replicon, indicating a streamlined genomic structure, which is represented in the genome accession PARK00000000.1. This genetic configuration may play a role in its adaptability to the specific conditions of its habitat. The presence of Desulfovibrio sp. in the rumen suggests its involvement in the complex microbial ecosystem that aids in the digestion of fibrous plant materials. This bacterium is likely to participate in sulfur metabolism, contributing to the biogeochemical cycling of sulfur compounds within the rumen. The unique combination of its Gram-negative cell wall structure and flagellar motility underscores its potential role in navigating the anaerobic conditions of its habitat, where it may interact with other microbial communities.

Taxonomy

KingdomPseudomonadati
PhylumThermodesulfobacteriota
ClassDesulfovibrionia
OrderDesulfovibrionales
FamilyDesulfovibrionaceae
GenusDesulfovibrio
SpeciesDesulfovibrio sp.
StrainNo strain

Profile

Physiology
Gram staining propertiesNegative
ShapeNot Available
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
Habitatrumen
Biotic relationshipNot Available
Host(s)Homo sapiens
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

MAG: Desulfovibrio sp. isolate SP109 MHASMcontig_2604448, whole

Gene Summary

Adenine Count

832197 bp

Thymine Count

823659 bp

Guanine Count

906575 bp

Cytosine Count

920576 bp

Genome Length

3484875 bp

Protein-coding Genes

0 genes

Non-Coding Genes

0 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
hydrogenase formation protein hypdCL942_05055Not AvailableNegative1050172 - 105126639721.2
phosphohydrolaseCL942_05060Not AvailablePositive1051514 - 105216124134.6
d-alanine--d-alanine ligaseCL942_05065Not AvailablePositive1052127 - 105304132767.3
3-deoxy-d-manno-octulosonic acid transferaseCL942_05070Not AvailablePositive1053043 - 105432947376.6
3-deoxy-manno-octulosonate cytidylyltransferaseCL942_05075Not AvailablePositive1054349 - 105508927416.8
carbamoyl phosphate synthase small subunitCL942_05080Not AvailablePositive1055089 - 105621341642.9
hypothetical proteinCL942_05085Not AvailablePositive1056250 - 105703830133.2
d-glycero-beta-d-manno-heptose-1,7-bisphosphate 7-phosphataseCL942_05090Not AvailableNegative1057308 - 105785619760.5
4-hydroxythreonine-4-phosphate dehydrogenase pdxaCL942_05095Not AvailableNegative1057859 - 105887836486.1
nudix hydrolaseCL942_05100Not AvailableNegative1058912 - 105939117156.5

Displaying genes 1121 – 1130 of 3269 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

3 records
Metabolite IDMetabolite nameStructureCAS number
BASm0016958Desferrioxamine EC27H48N6O9Chemical structure of Desferrioxamine ENULL
Average600.714Da
Monoisotopic600.34827715Da
BASm0016967Desferrioxamine GC27H50N6O10Chemical structure of Desferrioxamine GNULL
Average618.729Da
Monoisotopic618.358841834Da
BASm0040648Streptomyces aculeolatusNot availableNot availableNot available

Displaying 1–3 of 3 metabolites

Health Effects

No health effects information available for this bacterium.