Desulfovibrio desulfuricans

Gram-negativeRodNon-motileFacultative anaerobe

Kingdom

Pseudomonadati

Phylum

Thermodesulfobacteriota

Class

Desulfovibrionia

Order

Desulfovibrionales

Family

Desulfovibrionaceae

Genus

Desulfovibrio

Description

Desulfovibrio desulfuricans is a Gram-negative, rod-shaped bacterium characterized by its single-cell arrangement and the presence of true flagella, despite lacking motility. As a facultative anaerobe, it can thrive in both aerobic and anaerobic environments, indicating a versatile metabolic capability that allows it to inhabit a variety of habitats. This mesophilic organism is notable for having two cellular membranes, which is typical for Gram-negative bacteria. The genomic composition of D. desulfuricans includes a single replicon, and its genome is cataloged under the accession FPIW00000000.1. The bacterium is classified as free-living, which suggests it plays a significant role in its ecosystem, potentially contributing to biogeochemical cycles, particularly those involving sulfur compounds. Although it is acknowledged that D. desulfuricans has implications for human health, specific pathogenicity traits are not detailed in the current data. This bacterium's ability to adapt to diverse environments and its involvement in sulfur metabolism highlight its ecological importance, particularly in processes such as sulfate reduction, which can influence nutrient cycling in various ecosystems.

Taxonomy

KingdomPseudomonadati
PhylumThermodesulfobacteriota
ClassDesulfovibrionia
OrderDesulfovibrionales
FamilyDesulfovibrionaceae
GenusDesulfovibrio
SpeciesDesulfovibrio desulfuricans
StrainNo strain

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityNo
Flagellar presenceYes
Number of membranes2
Image of Desulfovibrio desulfuricans
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsFacultative anaerobe
Optimal temperatureNot Available
Temperature rangeMesophilic
HabitatMultiple
Biotic relationshipFree living
Host(s)Homo sapiens, Metazoa
Cell arrangementSingles
SporulationNot Available
Energy sourceNot Available
PathogenicityHuman

Genome Summary

Desulfovibrio desulfuricans strain DSM 7057 genome assembly,

Gene Summary

Adenine Count

692648 bp

Thymine Count

685526 bp

Guanine Count

920218 bp

Cytosine Count

931070 bp

Genome Length

3230378 bp

Protein-coding Genes

2834 genes

Non-Coding Genes

123 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
Dna packaging/head-tail-connectorSAMN02910291_02248Not AvailableNegative2520508 - 252114622814.2
hypothetical proteinSAMN02910291_02249Not AvailableNegative2521161 - 252160115391.9
Major capsid protein precursorSAMN02910291_02250Not AvailableNegative2521613 - 252281843691.6
Putative prohead proteaseSAMN02910291_02251Not AvailableNegative2522822 - 252353525458.6
Portal proteinSAMN02910291_02252Not AvailableNegative2523516 - 252476646130.8
Is30 family transposaseSAMN02910291_02253Not AvailableNegative2524895 - 252521411892.0
Isxcc1 transposaseSAMN02910291_02704Not AvailablePositive2990072 - 29903409984.61
Gp33SAMN02910291_02705Not AvailablePositive2990455 - 299095818812.8
Gp32, dna-binding protein rdgbSAMN02910291_02706Not AvailablePositive2990942 - 299127412429.9
hypothetical proteinSAMN02910291_02707Not AvailablePositive2991271 - 299185221390.8

Displaying genes 71 – 80 of 2957 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

18 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000989GlycerolC3H8O3Chemical structure of Glycerol56-81-5
Average92.0938Da
Monoisotopic92.04734412Da
BASm0014031Butyric acidC4H8O2Chemical structure of Butyric acid107-92-6
Average88.1051Da
Monoisotopic88.0524295Da
BASm0014032Acetic acidC2H4O2Chemical structure of Acetic acid64-19-7
Average60.052Da
Monoisotopic60.021129372Da
BASm0014033AmmoniaH3NChemical structure of Ammonia7664-41-7
Average17.0305Da
Monoisotopic17.026549101Da
BASm0014037Fumaric acidC4H4O4Chemical structure of Fumaric acid110-17-8
Average116.0722Da
Monoisotopic116.010958616Da
BASm0014038Malic acidC4H6O5Chemical structure of Malic acid97-67-6
Average134.0874Da
Monoisotopic134.021523302Da
BASm0014039L-Lactic acidC3H6O3Chemical structure of L-Lactic acid79-33-4
Average90.0779Da
Monoisotopic90.031694058Da
BASm0014045Propionic acidC3H6O2Chemical structure of Propionic acid79-09-4
Average74.0785Da
Monoisotopic74.036779436Da
BASm0014127MethylcysteineC4H9NO2SChemical structure of MethylcysteineNULL
Average135.18Da
Monoisotopic135.035399708Da

Displaying 1–10 of 18 metabolites

Health Effects

Health ConditionRelationReference
BacteremiaCausesPMC10370862
AppendicitisCausesPMC10370862
Abdominal abscessesCausesPMC10370862
Septic arthritisCausesPMC10370862
Blood infectionCausesPMC12131628

Displaying health effects 1 – 5 of 5 in total