Desulfovibrio desulfuricans str. IC1

Gram-negativeRodNon-motileFacultative anaerobe

Kingdom

Pseudomonadati

Phylum

Thermodesulfobacteriota

Class

Desulfovibrionia

Order

Desulfovibrionales

Family

Desulfovibrionaceae

Genus

Desulfovibrio

Description

Desulfovibrio desulfuricans str. IC1 is a Gram-negative, rod-shaped bacterium that typically exists as single cells. This microbe is characterized as a facultative anaerobe, allowing it to thrive in environments with varying oxygen levels. D. desulfuricans str. IC1 has been isolated from diverse habitats, indicating its versatile metabolic capabilities and adaptability to different ecological niches. Facultative anaerobes like D. desulfuricans str. IC1 can utilize both aerobic and anaerobic respiration, which may contribute to its success in fluctuating environments. The ability to survive in the presence or absence of oxygen suggests that this microorganism plays a significant role in biogeochemical cycling, particularly in the sulfur cycle, where it may participate in sulfate reduction processes. By converting sulfate to sulfide, D. desulfuricans str. IC1 may influence the availability of sulfur compounds in its habitat, which can have broader implications for nutrient cycling and microbial community dynamics. Overall, the physiological traits of Desulfovibrio desulfuricans str. IC1 highlight its ecological versatility and potential significance in microbial processes related to sulfur metabolism.

Taxonomy

KingdomPseudomonadati
PhylumThermodesulfobacteriota
ClassDesulfovibrionia
OrderDesulfovibrionales
FamilyDesulfovibrionaceae
GenusDesulfovibrio
SpeciesDesulfovibrio desulfuricans
StrainIC1

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityNo
Flagellar presenceYes
Number of membranes2
Image of Desulfovibrio desulfuricans str. IC1
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsFacultative anaerobe
Optimal temperatureNot Available
Temperature rangeMesophilic
HabitatMultiple
Biotic relationshipFree living
Host(s)Homo sapiens, Metazoa
Cell arrangementSingles
SporulationNot Available
Energy sourceNot Available
PathogenicityHuman

Genome Summary

Desulfovibrio desulfuricans strain IC1 chromosome, complete

Gene Summary

Adenine Count

665861 bp

Thymine Count

663789 bp

Guanine Count

962138 bp

Cytosine Count

959652 bp

Genome Length

3251440 bp

Protein-coding Genes

2678 genes

Non-Coding Genes

83 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
gaf domain-containing proteinDDIC_RS06265Not AvailablePositive1498324 - 149936138393.1
rod shape-determining proteinDDIC_RS06270Not AvailablePositive1499364 - 150038936795.6
inositol monophosphatase family proteinDDIC_RS06275Not AvailablePositive1500718 - 150153329150.1
nudix hydrolaseDDIC_RS06280Not AvailableNegative1501548 - 150206318686.7
ribosomal protein s18-alanine n-acetyltransferaseDDIC_RS06285Not AvailablePositive1502062 - 150252017310.3
triose-phosphate isomeraseDDIC_RS06290Not AvailablePositive1502535 - 150329926297.8
preprotein translocase subunit secgDDIC_RS06295Not AvailablePositive1503351 - 150374612846.0
smr/muts family proteinDDIC_RS06300Not AvailablePositive1503828 - 150487737411.2
dnaj family domain-containing proteinDDIC_RS06305Not AvailableNegative1505086 - 150549915884.1
dna mismatch repair protein mutsDDIC_RS06310Not AvailableNegative1505492 - 1508212100207.0

Displaying genes 1261 – 1270 of 2761 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

315 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0000893crotonobetaineC7H13NO2Chemical structure of crotonobetaine927-89-9
Average143.1836Da
Monoisotopic143.0946287Da
BASm0000989GlycerolC3H8O3Chemical structure of Glycerol56-81-5
Average92.0938Da
Monoisotopic92.04734412Da
BASm0001167triphosphateO10P3Chemical structure of triphosphate14127-68-5
Average252.9153Da
Monoisotopic252.8704308Da
BASm0001360methanesulfonateCH3O3SChemical structure of methanesulfonate59721-29-8
Average95.09Da
Monoisotopic94.980838711Da
BASm0001639CobinamideC48H72CoN11O8Chemical structure of Cobinamide13497-85-3
Average990.0874Da
Monoisotopic989.4897335Da
BASm0001661Cu(2+)CuChemical structure of Cu(2+)7440-50-8
Average63.546Da
Monoisotopic62.929601079Da

Displaying 1–10 of 315 metabolites

Health Effects

Health ConditionRelationReference
BacteremiaCausesPMC10370862
AppendicitisCausesPMC10370862
Abdominal abscessesCausesPMC10370862
Septic arthritisCausesPMC10370862
Blood infectionCausesPMC12131628

Displaying health effects 1 – 5 of 5 in total