Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | CL10T00C06 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1420826 bp
Thymine Count
1424215 bp
Guanine Count
1046299 bp
Cytosine Count
1024853 bp
Genome Length
4918368 bp
Protein-coding Genes
4025 genes
Non-Coding Genes
85 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| tonb-linked outer membrane protein, susc/raga family | CK234_00936 | Not Available | Positive | 1239167 - 1242238 | 113124.0 |
| susd family protein | CK234_00937 | Not Available | Positive | 1242253 - 1244187 | 71558.0 |
| pf13808-domain containing protein, associated with dde transposase | CK234_00938 | Not Available | Positive | 1244587 - 1245213 | 23048.2 |
| hypothetical protein | CK234_00939 | Not Available | Positive | 1245762 - 1245974 | 7884.73 |
| putative sensor histidine kinase, tmos-like | CK234_00940 | Not Available | Negative | 1246193 - 1250245 | 154930.0 |
| carbohydrate acetyl esterase/feruloyl esterase precursor | CK234_00941 | Not Available | Positive | 1250483 - 1252990 | 94279.2 |
| beta-xylosidase | CK234_00942 | Not Available | Positive | 1252999 - 1254582 | 60270.6 |
| glycosyl hydrolase family 115 | CK234_00943 | Not Available | Positive | 1254595 - 1257189 | 99402.6 |
| extracellular xylan exo-alpha-(1->2)-glucuronosidase precursor | CK234_00944 | Not Available | Positive | 1257186 - 1259231 | 77308.3 |
| carbohydrate esterase, sialic acid-specific acetylesterase | CK234_00945 | Not Available | Positive | 1259259 - 1261196 | 72324.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

