Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | CL10T00C06 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1420826 bp
Thymine Count
1424215 bp
Guanine Count
1046299 bp
Cytosine Count
1024853 bp
Genome Length
4918368 bp
Protein-coding Genes
4025 genes
Non-Coding Genes
85 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| putative c4-dicarboxylic acid transporter, daua-like | CK234_00466 | Not Available | Positive | 593638 - 595320 | 60574.7 |
| radical sam superfamily protein | CK234_00467 | Not Available | Negative | 596231 - 597007 | 29462.4 |
| helix-hairpin-helix motif protein | CK234_00468 | Not Available | Negative | 597053 - 599125 | 81330.2 |
| protein of unknown function (duf4294) | CK234_00469 | Not Available | Positive | 599288 - 599794 | 19619.1 |
| putative trmh family trna/rrna methyltransferase | CK234_00470 | Not Available | Negative | 599825 - 600361 | 19963.2 |
| outer membrane protein beta-barrel family protein | CK234_00471 | Not Available | Positive | 601083 - 603401 | 88603.0 |
| quinolinate synthase a | CK234_00472 | Not Available | Positive | 603504 - 604496 | 36624.0 |
| non-canonical purine ntp pyrophosphatase | CK234_00473 | Not Available | Negative | 604751 - 605332 | 21378.7 |
| acetyltransferase (gnat) domain protein | CK234_00474 | Not Available | Positive | 605432 - 606019 | 23213.7 |
| putative 5xtm membrane bcr, yitt family-like | CK234_00475 | Not Available | Negative | 606118 - 607014 | 33214.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

