Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | CL10T00C06 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1420826 bp
Thymine Count
1424215 bp
Guanine Count
1046299 bp
Cytosine Count
1024853 bp
Genome Length
4918368 bp
Protein-coding Genes
4025 genes
Non-Coding Genes
85 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| tonb-linked outer membrane protein, susc/raga family | CK234_00456 | Not Available | Negative | 571727 - 574756 | 112994.0 |
| pd-(d/e)xk nuclease superfamily protein | CK234_00457 | Not Available | Positive | 575204 - 575803 | 23268.9 |
| putative lambdoid prophage rac-like dna-invertase | CK234_00458 | Not Available | Negative | 576644 - 577255 | 23063.3 |
| non-reducing end beta-l-arabinofuranosidase | CK234_00459 | Not Available | Positive | 577634 - 580069 | 90977.7 |
| tonb-linked outer membrane protein, susc/raga family | CK234_00460 | Not Available | Positive | 580104 - 583148 | 114150.0 |
| susd family protein | CK234_00461 | Not Available | Positive | 583175 - 584794 | 61301.8 |
| beta-l-arabinobiosidase precursor | CK234_00462 | Not Available | Positive | 584940 - 588290 | 126304.0 |
| putative sensor histidine kinase, tods-like | CK234_00463 | Not Available | Positive | 588431 - 592417 | 150412.0 |
| rubrerythrin | CK234_00464 | Not Available | Negative | 592511 - 593089 | 21626.4 |
| protein of unknown function (duf4884) | CK234_00465 | Not Available | Positive | 593270 - 593539 | 10182.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

