Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | CL10T00C06 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1420826 bp
Thymine Count
1424215 bp
Guanine Count
1046299 bp
Cytosine Count
1024853 bp
Genome Length
4918368 bp
Protein-coding Genes
4025 genes
Non-Coding Genes
85 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| peptidoglycan-n-acetylglucosamine deacetylase | CK234_00436 | Not Available | Positive | 540848 - 541459 | 24627.9 |
| protein of unknown function (duf4861) | CK234_00437 | Not Available | Negative | 541517 - 542689 | 42906.5 |
| gluconate 5-dehydrogenase | CK234_00438 | Not Available | Negative | 542786 - 543589 | 28590.5 |
| 4-deoxy-l-threo-5-hexosulose-uronate ketol-isomerase | CK234_00439 | Not Available | Negative | 543626 - 544468 | 31850.9 |
| putative d-alanyl-d-alanine carboxypeptidase, dacb precursor-like | CK234_00440 | Not Available | Negative | 544639 - 546039 | 52306.5 |
| dihydrolipoyl dehydrogenase | CK234_00441 | Not Available | Negative | 546039 - 547379 | 47635.7 |
| bacterial ph domain protein | CK234_00442 | Not Available | Negative | 547395 - 547808 | 15716.4 |
| bacterial ph domain protein | CK234_00443 | Not Available | Negative | 547812 - 548222 | 15494.5 |
| orf6n domain protein | CK234_00444 | Not Available | Negative | 548298 - 548858 | 21509.0 |
| l-aspartate oxidase | CK234_00445 | Not Available | Positive | 549014 - 550594 | 58967.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

