Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | CL10T00C06 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1420826 bp
Thymine Count
1424215 bp
Guanine Count
1046299 bp
Cytosine Count
1024853 bp
Genome Length
4918368 bp
Protein-coding Genes
4025 genes
Non-Coding Genes
85 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| putative ecf rna polymerase sigma factor, rpoe-like | CK234_00385 | Not Available | Negative | 470103 - 470648 | 21382.9 |
| tonb-linked outer membrane protein, susc/raga family | CK234_00386 | Not Available | Positive | 470969 - 474010 | 112156.0 |
| susd and ragb-like outer membrane lipoprotein | CK234_00387 | Not Available | Positive | 474010 - 475713 | 63029.3 |
| putative ecf rna polymerase sigma factor, sige-like | CK234_00388 | Not Available | Positive | 475959 - 476468 | 19967.9 |
| fecr protein | CK234_00389 | Not Available | Positive | 476538 - 477341 | 30911.8 |
| tonb-linked outer membrane protein, susc/raga family | CK234_00390 | Not Available | Positive | 477338 - 479992 | 100786.0 |
| protein of unknown function (duf4249) | CK234_00391 | Not Available | Positive | 479999 - 480964 | 36360.1 |
| erythronate-4-phosphate dehydrogenase | CK234_00392 | Not Available | Negative | 481129 - 482154 | 38339.9 |
| putative lipopolysaccharide core heptosyltransferase, rfaq-like | CK234_00393 | Not Available | Positive | 482259 - 483290 | 38600.2 |
| lipid a biosynthesis lauroyl (or palmitoleoyl) acyltransferase | CK234_00394 | Not Available | Positive | 483291 - 484214 | 37581.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

