Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | CL10T00C06 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1420826 bp
Thymine Count
1424215 bp
Guanine Count
1046299 bp
Cytosine Count
1024853 bp
Genome Length
4918368 bp
Protein-coding Genes
4025 genes
Non-Coding Genes
85 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| susd family protein | CK234_03647 | Not Available | Negative | 4424350 - 4426038 | 64006.0 |
| tonb-linked outer membrane protein, susc/raga family | CK234_03648 | Not Available | Negative | 4426064 - 4429135 | 113409.0 |
| alpha-l-fucosidase | CK234_03649 | Not Available | Negative | 4429226 - 4430872 | 62649.7 |
| arabinose operon regulatory protein | CK234_03650 | Not Available | Positive | 4431114 - 4431974 | 33567.5 |
| d-threo-aldose 1-dehydrogenase | CK234_03651 | Not Available | Positive | 4432092 - 4433024 | 34845.4 |
| amidohydrolase | CK234_03652 | Not Available | Positive | 4433039 - 4433965 | 35752.4 |
| l-fucose-proton symporter | CK234_03653 | Not Available | Positive | 4433992 - 4435251 | 47261.1 |
| putative zinc-type alcohol dehydrogenase-like protein, yjmd-like | CK234_03654 | Not Available | Positive | 4435274 - 4436293 | 36707.0 |
| putative membrane protein, marc family-like | CK234_03655 | Not Available | Negative | 4436366 - 4437010 | 23868.2 |
| transposase dde domain protein | CK234_03656 | Not Available | Positive | 4437335 - 4437937 | 22936.7 |
Pathways
343 pathways
Health Effects
No health effects information available for this bacterium.

