Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | CL10T00C06 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1420826 bp
Thymine Count
1424215 bp
Guanine Count
1046299 bp
Cytosine Count
1024853 bp
Genome Length
4918368 bp
Protein-coding Genes
4025 genes
Non-Coding Genes
85 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | CK234_03577 | Not Available | Negative | 4346674 - 4346892 | 8466.01 |
| putative regulatory protein, soxs-like | CK234_03578 | Not Available | Positive | 4347057 - 4347959 | 34918.8 |
| hypothetical protein | CK234_03579 | Not Available | Negative | 4348946 - 4349149 | 7723.43 |
| putative unsaturated rhamnogalacturonyl hydrolase, yesr-like | CK234_03580 | Not Available | Positive | 4349482 - 4350780 | 49915.8 |
| hypothetical protein | CK234_03581 | Not Available | Negative | 4350837 - 4351334 | 18681.7 |
| outer membrane protein beta-barrel domain protein | CK234_03582 | Not Available | Negative | 4351347 - 4351994 | 24488.9 |
| hypothetical protein | CK234_03583 | Not Available | Positive | 4352174 - 4352422 | 9253.75 |
| hypothetical protein | CK234_03584 | Not Available | Positive | 4352627 - 4352845 | 8004.92 |
| thioredoxin-1 | CK234_03585 | Not Available | Positive | 4352848 - 4353327 | 17688.5 |
| putative homoprotocatechuate degradation operon regulator, hpar-like | CK234_03586 | Not Available | Positive | 4353365 - 4353712 | 13249.2 |
Pathways
343 pathways
Health Effects
No health effects information available for this bacterium.

