Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | CL10T00C06 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1420826 bp
Thymine Count
1424215 bp
Guanine Count
1046299 bp
Cytosine Count
1024853 bp
Genome Length
4918368 bp
Protein-coding Genes
4025 genes
Non-Coding Genes
85 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| tonb-linked outer membrane protein, susc/raga family | CK234_03537 | Not Available | Positive | 4303911 - 4305266 | 51652.4 |
| susd family protein | CK234_03538 | Not Available | Positive | 4305285 - 4306799 | 56835.2 |
| calcineurin-like phosphoesterase | CK234_03539 | Not Available | Positive | 4306847 - 4308010 | 44489.9 |
| putative l-serine dehydratase, tdcg-like | CK234_03540 | Not Available | Positive | 4308160 - 4309368 | 43967.2 |
| hypothetical protein | CK234_03541 | Not Available | Positive | 4309944 - 4310363 | 17001.7 |
| dtdp-glucose 4,6-dehydratase | CK234_03542 | Not Available | Negative | 4310624 - 4311700 | 41496.0 |
| dtdp-4-dehydrorhamnose reductase | CK234_03543 | Not Available | Negative | 4311725 - 4312585 | 32219.3 |
| dtdp-4-dehydrorhamnose 3,5-epimerase | CK234_03544 | Not Available | Negative | 4312585 - 4313157 | 21745.9 |
| glucose-1-phosphate thymidylyltransferase 2 | CK234_03545 | Not Available | Negative | 4313161 - 4314066 | 33625.5 |
| putative exopolysaccharide biosynthesis protein, ybjh-like | CK234_03546 | Not Available | Negative | 4314088 - 4314924 | 32321.7 |
Pathways
343 pathways
Health Effects
No health effects information available for this bacterium.

