Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | CL10T00C06 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1420826 bp
Thymine Count
1424215 bp
Guanine Count
1046299 bp
Cytosine Count
1024853 bp
Genome Length
4918368 bp
Protein-coding Genes
4025 genes
Non-Coding Genes
85 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| ferric uptake regulator family protein | CK234_03527 | Not Available | Positive | 4292483 - 4292908 | 16179.7 |
| acyltransferase family protein | CK234_03528 | Not Available | Negative | 4293081 - 4294232 | 43081.8 |
| cyclic nucleotide-binding domain protein | CK234_03529 | Not Available | Negative | 4294350 - 4294913 | 22255.1 |
| hypothetical protein | CK234_03530 | Not Available | Positive | 4295578 - 4295877 | 11836.5 |
| bacterial ph domain protein | CK234_03531 | Not Available | Positive | 4296046 - 4296489 | 16722.8 |
| Trna-ser | Not Available | Not Available | Positive | 4297212 - 4297296 | Not Available |
| muts2-like endonuclease | CK234_03533 | Not Available | Positive | 4297445 - 4299955 | 95350.9 |
| rna polymerase sigma-70 factor | CK234_03534 | Not Available | Positive | 4300035 - 4300586 | 21576.8 |
| protein of unknown function (duf4974) | CK234_03535 | Not Available | Positive | 4300690 - 4301859 | 44531.5 |
| tonb-linked outer membrane protein, susc/raga family | CK234_03536 | Not Available | Positive | 4301875 - 4303914 | 75516.0 |
Pathways
216 pathways
Health Effects
No health effects information available for this bacterium.

