Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | CL10T00C06 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1420826 bp
Thymine Count
1424215 bp
Guanine Count
1046299 bp
Cytosine Count
1024853 bp
Genome Length
4918368 bp
Protein-coding Genes
4025 genes
Non-Coding Genes
85 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| ribosomal large subunit pseudouridine synthase d | CK234_03487 | Not Available | Negative | 4247960 - 4248886 | 35718.2 |
| rlmcd-like 23s rrna uracil-c(5)-methyltransferase | CK234_03488 | Not Available | Negative | 4248931 - 4250352 | 54000.1 |
| pyruvate, phosphate dikinase | CK234_03489 | Not Available | Positive | 4250506 - 4253271 | 101684.0 |
| phage integrase sam-like domain protein | CK234_03490 | Not Available | Positive | 4253485 - 4254981 | 58037.7 |
| hypothetical protein | CK234_03491 | Not Available | Negative | 4255055 - 4255267 | 8204.06 |
| hypothetical protein | CK234_03492 | Not Available | Positive | 4256143 - 4256529 | 14710.8 |
| relaxase/mobilization nuclease domain protein | CK234_03493 | Not Available | Positive | 4256647 - 4258212 | 60685.2 |
| dna helicase ii | CK234_03494 | Not Available | Negative | 4258622 - 4260397 | 68455.1 |
| recf protein | CK234_03495 | Not Available | Negative | 4260400 - 4262475 | 79420.4 |
| putative plasmid partitioning protein, repa-like | CK234_03496 | Not Available | Positive | 4262704 - 4263564 | 32355.2 |
Pathways
216 pathways
Health Effects
No health effects information available for this bacterium.

