Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | CL10T00C06 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1420826 bp
Thymine Count
1424215 bp
Guanine Count
1046299 bp
Cytosine Count
1024853 bp
Genome Length
4918368 bp
Protein-coding Genes
4025 genes
Non-Coding Genes
85 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| chorismate synthase | CK234_03447 | Not Available | Negative | 4200291 - 4201367 | 39168.8 |
| lema family protein | CK234_03448 | Not Available | Negative | 4201576 - 4202157 | 21752.9 |
| tpm domain protein | CK234_03449 | Not Available | Negative | 4202194 - 4203114 | 33346.0 |
| prolyl oligopeptidase family protein | CK234_03450 | Not Available | Negative | 4203111 - 4204046 | 35854.3 |
| shikimate dehydrogenase | CK234_03451 | Not Available | Negative | 4204069 - 4204809 | 27766.7 |
| putative ubiquinone/menaquinone biosynthesis c-methyltransferase, ubie-like | CK234_03452 | Not Available | Negative | 4204828 - 4205565 | 27936.8 |
| phosphoribosylaminoimidazole-succinocarboxamide synthase | CK234_03453 | Not Available | Negative | 4205658 - 4206602 | 35902.1 |
| phoh-like protein | CK234_03454 | Not Available | Negative | 4206623 - 4207627 | 37733.4 |
| hypothetical protein | CK234_03455 | Not Available | Positive | 4207785 - 4208459 | 24792.2 |
| trna pseudouridine synthase a | CK234_03456 | Not Available | Positive | 4208464 - 4209267 | 30885.8 |
Pathways
343 pathways
Health Effects
No health effects information available for this bacterium.

