Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | CL10T00C06 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1420826 bp
Thymine Count
1424215 bp
Guanine Count
1046299 bp
Cytosine Count
1024853 bp
Genome Length
4918368 bp
Protein-coding Genes
4025 genes
Non-Coding Genes
85 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| preprotein translocase, seca subunit | CK234_03437 | Not Available | Positive | 4187749 - 4191045 | 125159.0 |
| hypothetical protein | CK234_03438 | Not Available | Positive | 4191168 - 4192160 | 37676.2 |
| hypothetical protein | CK234_03439 | Not Available | Positive | 4192231 - 4192680 | 17049.0 |
| hypothetical protein | CK234_03440 | Not Available | Negative | 4192755 - 4193132 | 14902.8 |
| putative ecf rna polymerase sigma factor, sigw-like | CK234_03441 | Not Available | Negative | 4193129 - 4193674 | 21010.2 |
| hypothetical protein | CK234_03442 | Not Available | Positive | 4193821 - 4194261 | 16227.5 |
| valine--trna ligase | CK234_03443 | Not Available | Negative | 4194442 - 4197069 | 99731.5 |
| nucleoside triphosphate pyrophosphohydrolase | CK234_03444 | Not Available | Positive | 4197180 - 4197965 | 30570.4 |
| fmn reductase (nadph) | CK234_03445 | Not Available | Negative | 4198283 - 4198912 | 23122.0 |
| succinyl-diaminopimelate desuccinylase | CK234_03446 | Not Available | Negative | 4198925 - 4200277 | 49852.0 |
Pathways
343 pathways
Health Effects
No health effects information available for this bacterium.

