Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | CL10T00C06 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1420826 bp
Thymine Count
1424215 bp
Guanine Count
1046299 bp
Cytosine Count
1024853 bp
Genome Length
4918368 bp
Protein-coding Genes
4025 genes
Non-Coding Genes
85 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| tonb-linked outer membrane protein, susc/raga family | CK234_03298 | Not Available | Positive | 4052814 - 4054148 | 48215.9 |
| tonb-linked outer membrane protein, susc/raga family | CK234_03299 | Not Available | Positive | 4054099 - 4056111 | 75933.6 |
| susd family protein | CK234_03300 | Not Available | Positive | 4056142 - 4057584 | 53754.5 |
| prolyl tripeptidyl peptidase precursor | CK234_03301 | Not Available | Positive | 4057617 - 4058654 | 39546.7 |
| porin o- and p-like phosphate-selective protein | CK234_03302 | Not Available | Positive | 4058888 - 4059967 | 40814.7 |
| Trna-phe | Not Available | Not Available | Positive | 4060386 - 4060461 | Not Available |
| Trna-pro | Not Available | Not Available | Positive | 4060642 - 4060714 | Not Available |
| putative murein dd-endopeptidase, mepm-like | CK234_03305 | Not Available | Negative | 4062141 - 4063811 | 62669.7 |
| alanine dehydrogenase | CK234_03306 | Not Available | Positive | 4064005 - 4065096 | 39028.8 |
| putative sec-independent protein translocase protein, tatc-like | CK234_03307 | Not Available | Negative | 4065183 - 4066013 | 32372.7 |
Pathways
343 pathways
Health Effects
No health effects information available for this bacterium.

