Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | CL10T00C06 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1420826 bp
Thymine Count
1424215 bp
Guanine Count
1046299 bp
Cytosine Count
1024853 bp
Genome Length
4918368 bp
Protein-coding Genes
4025 genes
Non-Coding Genes
85 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| protein of unknown function (duf4251) | CK234_03138 | Not Available | Negative | 3901978 - 3902532 | 20119.4 |
| hypothetical protein | CK234_03139 | Not Available | Positive | 3902697 - 3903194 | 19097.1 |
| ampg-like permease | CK234_03140 | Not Available | Negative | 3903498 - 3904772 | 47720.5 |
| amidase enhancer precursor | CK234_03141 | Not Available | Negative | 3904830 - 3906146 | 49960.9 |
| putative hopene-associated glycosyltransferase, hpnb-like | CK234_03142 | Not Available | Negative | 3906203 - 3908674 | 94514.2 |
| putative dual-specificity rna methyltransferase, rlmn-like | CK234_03143 | Not Available | Positive | 3908761 - 3909810 | 39554.0 |
| protein of unknown function (duf4837) | CK234_03144 | Not Available | Positive | 3909836 - 3910900 | 40606.1 |
| 4-hydroxythreonine-4-phosphate dehydrogenase | CK234_03145 | Not Available | Positive | 3910927 - 3912027 | 40647.4 |
| udp-n-acetylglucosamine diphosphorylase/glucosamine-1-phosphate n-acetyltransferase | CK234_03146 | Not Available | Positive | 3912069 - 3912779 | 26297.6 |
| putative rimk family alpha-l-glutamate ligase | CK234_03147 | Not Available | Positive | 3912799 - 3913650 | 31795.0 |
Pathways
216 pathways
Health Effects
No health effects information available for this bacterium.

