Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | CL10T00C06 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1420826 bp
Thymine Count
1424215 bp
Guanine Count
1046299 bp
Cytosine Count
1024853 bp
Genome Length
4918368 bp
Protein-coding Genes
4025 genes
Non-Coding Genes
85 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| dipeptidase | CK234_03118 | Not Available | Positive | 3878574 - 3880172 | 60242.0 |
| peptidase c1-like family protein | CK234_03119 | Not Available | Positive | 3880204 - 3881394 | 45290.6 |
| prolyl tripeptidyl peptidase precursor | CK234_03120 | Not Available | Positive | 3881525 - 3883756 | 84409.6 |
| starch-binding associating with outer membrane | CK234_03121 | Not Available | Negative | 3884735 - 3886465 | 65732.7 |
| tonb-linked outer membrane protein, susc/raga family | CK234_03122 | Not Available | Negative | 3886489 - 3889650 | 117844.0 |
| hypothetical protein | CK234_03123 | Not Available | Negative | 3889924 - 3890370 | 17649.5 |
| hypothetical protein | CK234_03124 | Not Available | Negative | 3890382 - 3890759 | 14624.4 |
| putative ecf rna polymerase sigma factor, sigw-like | CK234_03125 | Not Available | Negative | 3890804 - 3891355 | 21615.8 |
| ribonuclease z | CK234_03126 | Not Available | Negative | 3891389 - 3892216 | 31413.1 |
| cold-shock dna-binding domain protein | CK234_03127 | Not Available | Negative | 3892389 - 3892835 | 17045.4 |
Pathways
216 pathways
Health Effects
No health effects information available for this bacterium.

