Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | CL10T00C06 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1420826 bp
Thymine Count
1424215 bp
Guanine Count
1046299 bp
Cytosine Count
1024853 bp
Genome Length
4918368 bp
Protein-coding Genes
4025 genes
Non-Coding Genes
85 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| putative lipoprotein-releasing system transmembrane protein, lole-like | CK234_03108 | Not Available | Negative | 3866754 - 3867998 | 46918.6 |
| aspartate aminotransferase | CK234_03109 | Not Available | Negative | 3868000 - 3869262 | 47421.2 |
| hypothetical protein | CK234_03110 | Not Available | Positive | 3869368 - 3870603 | 46189.3 |
| protein of unknown function (duf4494) | CK234_03111 | Not Available | Positive | 3870699 - 3871181 | 18209.6 |
| putative pyridoxal phosphate enzyme, yggs family-like | CK234_03112 | Not Available | Positive | 3871215 - 3871883 | 25398.4 |
| putative nad-dependent dihydropyrimidine dehydrogenase subunit, prea-like | CK234_03113 | Not Available | Positive | 3871897 - 3872871 | 35625.3 |
| long-chain-fatty-acid--coa ligase | CK234_03114 | Not Available | Positive | 3873048 - 3874706 | 62504.7 |
| hypothetical protein | CK234_03115 | Not Available | Positive | 3874960 - 3876345 | 48513.0 |
| protein of unknown function (duf3943) | CK234_03116 | Not Available | Positive | 3876384 - 3877856 | 56314.4 |
| cyclic nucleotide-binding domain protein | CK234_03117 | Not Available | Negative | 3877853 - 3878467 | 24184.5 |
Pathways
216 pathways
Health Effects
No health effects information available for this bacterium.

