Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | CL10T00C06 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1420826 bp
Thymine Count
1424215 bp
Guanine Count
1046299 bp
Cytosine Count
1024853 bp
Genome Length
4918368 bp
Protein-coding Genes
4025 genes
Non-Coding Genes
85 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| beta-galactosidase | CK234_03088 | Not Available | Negative | 3850313 - 3852352 | 78046.9 |
| outer membrane protein beta-barrel domain protein | CK234_03089 | Not Available | Negative | 3852650 - 3853327 | 25316.8 |
| hypothetical protein | CK234_03090 | Not Available | Positive | 3853812 - 3854000 | 7146.55 |
| hypothetical protein | CK234_03091 | Not Available | Negative | 3854485 - 3854880 | 14879.6 |
| Trna-asp | Not Available | Not Available | Positive | 3854944 - 3855020 | Not Available |
| Trna-asp | Not Available | Not Available | Positive | 3855047 - 3855123 | Not Available |
| Trna-asp | Not Available | Not Available | Positive | 3855151 - 3855227 | Not Available |
| formyltetrahydrofolate deformylase | CK234_03095 | Not Available | Positive | 3855492 - 3856349 | 33270.5 |
| putative imidazole glycerol phosphate synthase subunit, hish-like | CK234_03096 | Not Available | Positive | 3856349 - 3856939 | 22270.8 |
| 1-(5-phosphoribosyl)-5-((5- phosphoribosylamino)methylideneamino) imidazole-4-carboxamide isomerase | CK234_03097 | Not Available | Positive | 3856981 - 3857700 | 26636.3 |
Pathways
216 pathways
Health Effects
No health effects information available for this bacterium.

