Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | CL10T00C06 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1420826 bp
Thymine Count
1424215 bp
Guanine Count
1046299 bp
Cytosine Count
1024853 bp
Genome Length
4918368 bp
Protein-coding Genes
4025 genes
Non-Coding Genes
85 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| flavodoxin-1 | CK234_03058 | Not Available | Positive | 3816999 - 3817502 | 17935.1 |
| protein of unknown function (duf2023) | CK234_03059 | Not Available | Positive | 3817519 - 3817863 | 13416.7 |
| hypothetical protein | CK234_03060 | Not Available | Positive | 3818006 - 3818176 | 6201.39 |
| thioredoxin-1 | CK234_03061 | Not Available | Positive | 3818196 - 3818492 | 11390.7 |
| aspartate--trna ligase | CK234_03062 | Not Available | Positive | 3818621 - 3820384 | 66472.9 |
| methylated-dna--protein-cysteine methyltransferase | CK234_03063 | Not Available | Positive | 3820559 - 3821086 | 19617.8 |
| protein of unknown function (duf4251) | CK234_03064 | Not Available | Negative | 3821180 - 3821770 | 21487.3 |
| n-carbamoyl-d-amino acid hydrolase | CK234_03065 | Not Available | Negative | 3821885 - 3822772 | 33246.4 |
| putative agmatine deiminase | CK234_03066 | Not Available | Negative | 3822784 - 3823809 | 39316.7 |
| tamb, inner membrane protein subunit of tam complex | CK234_03067 | Not Available | Negative | 3823864 - 3828324 | 166440.0 |
Pathways
216 pathways
Health Effects
No health effects information available for this bacterium.

