Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | CL10T00C06 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1420826 bp
Thymine Count
1424215 bp
Guanine Count
1046299 bp
Cytosine Count
1024853 bp
Genome Length
4918368 bp
Protein-coding Genes
4025 genes
Non-Coding Genes
85 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| gtp cyclohydrolase 1 | CK234_03018 | Not Available | Positive | 3763836 - 3764429 | 22693.7 |
| dna primase | CK234_03019 | Not Available | Negative | 3764442 - 3766517 | 78746.5 |
| malate dehydrogenase | CK234_03020 | Not Available | Negative | 3766595 - 3767596 | 36087.5 |
| winged helix dna-binding domain protein | CK234_03021 | Not Available | Negative | 3767840 - 3768130 | 10732.2 |
| hypothetical protein | CK234_03022 | Not Available | Negative | 3768141 - 3768728 | 22318.1 |
| hypothetical protein | CK234_03023 | Not Available | Negative | 3768758 - 3769006 | 9849.92 |
| protein of unknown function (duf3874) | CK234_03024 | Not Available | Positive | 3770090 - 3771346 | 48865.9 |
| lactaldehyde reductase | CK234_03025 | Not Available | Positive | 3771560 - 3772714 | 40917.7 |
| hypothetical protein | CK234_03026 | Not Available | Positive | 3772748 - 3773437 | 26567.2 |
| tonb-linked outer membrane protein, susc/raga family | CK234_03027 | Not Available | Positive | 3773476 - 3776622 | 115904.0 |
Pathways
216 pathways
Health Effects
No health effects information available for this bacterium.

