Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | CL10T00C06 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1420826 bp
Thymine Count
1424215 bp
Guanine Count
1046299 bp
Cytosine Count
1024853 bp
Genome Length
4918368 bp
Protein-coding Genes
4025 genes
Non-Coding Genes
85 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| na(+)-translocating nadh-quinone reductase subunit d | CK234_02888 | Not Available | Positive | 3626406 - 3627044 | 23121.2 |
| na(+)-translocating nadh-quinone reductase subunit e | CK234_02889 | Not Available | Positive | 3627069 - 3627665 | 21276.9 |
| na(+)-translocating nadh-quinone reductase subunit f | CK234_02890 | Not Available | Positive | 3627684 - 3628958 | 47059.9 |
| putative atp-dependent rna helicase, dbpa-like | CK234_02891 | Not Available | Positive | 3629055 - 3630368 | 49405.7 |
| phosphoserine aminotransferase | CK234_02892 | Not Available | Positive | 3630623 - 3631693 | 39557.6 |
| d-3-phosphoglycerate dehydrogenase | CK234_02893 | Not Available | Positive | 3631801 - 3632721 | 33053.2 |
| protein of unknown function (duf1015) | CK234_02894 | Not Available | Positive | 3632830 - 3634077 | 47087.9 |
| carboxylate/amino acid/amine transporter | CK234_02895 | Not Available | Positive | 3634314 - 3635228 | 32976.2 |
| beta-hexosaminidase | Not Available | Not Available | Positive | 3635289 - 3637595 | 86521.5 |
| splicing factor, cc1-like family | CK234_02897 | Not Available | Negative | 3637779 - 3638024 | 9169.97 |
Pathways
343 pathways
Health Effects
No health effects information available for this bacterium.

