Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | CL10T00C06 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1420826 bp
Thymine Count
1424215 bp
Guanine Count
1046299 bp
Cytosine Count
1024853 bp
Genome Length
4918368 bp
Protein-coding Genes
4025 genes
Non-Coding Genes
85 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| udp-n-acetylglucosamine 4,6-dehydratase (inverting) | CK234_02848 | Not Available | Positive | 3580057 - 3580899 | 31290.1 |
| putative transposase or invertase | CK234_02849 | Not Available | Positive | 3581006 - 3581383 | 14077.9 |
| acetylornithine deacetylase | CK234_02850 | Not Available | Negative | 3581389 - 3582453 | 39103.8 |
| long-chain-fatty-acid--coa ligase | CK234_02851 | Not Available | Positive | 3582667 - 3584472 | 68368.2 |
| peptide chain release factor 2 | CK234_02852 | Not Available | Positive | 3584530 - 3585645 | 42519.2 |
| cyth domain protein | CK234_02853 | Not Available | Positive | 3585940 - 3586410 | 18287.6 |
| outer membrane protein beta-barrel family protein | CK234_02854 | Not Available | Positive | 3586500 - 3588974 | 91599.6 |
| putative ecf rna polymerase sigma factor, sigr-like | CK234_02855 | Not Available | Positive | 3589143 - 3589646 | 19779.6 |
| vanz family protein | CK234_02856 | Not Available | Negative | 3589727 - 3590113 | 14818.4 |
| sodium:neurotransmitter symporter family protein | CK234_02857 | Not Available | Positive | 3590209 - 3591573 | 49149.3 |
Pathways
343 pathways
Health Effects
No health effects information available for this bacterium.

