Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | CL10T00C06 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1420826 bp
Thymine Count
1424215 bp
Guanine Count
1046299 bp
Cytosine Count
1024853 bp
Genome Length
4918368 bp
Protein-coding Genes
4025 genes
Non-Coding Genes
85 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | CK234_02818 | Not Available | Negative | 3544545 - 3545024 | 18339.8 |
| putative ecf rna polymerase sigma factor, sigr-like | CK234_02819 | Not Available | Negative | 3545014 - 3545523 | 20158.2 |
| acetylglutamate kinase | CK234_02820 | Not Available | Negative | 3545587 - 3546360 | 27207.2 |
| biosynthetic arginine decarboxylase | CK234_02821 | Not Available | Negative | 3546365 - 3548257 | 71492.0 |
| shikimate kinase | CK234_02822 | Not Available | Negative | 3548299 - 3548826 | 20453.7 |
| dna topoisomerase 1 | CK234_02823 | Not Available | Negative | 3548823 - 3551261 | 91433.3 |
| putative vitamin b12 transporter, btub-like | CK234_02824 | Not Available | Negative | 3551383 - 3553080 | 64322.7 |
| putative tol-pal system protein, ybgf-like | CK234_02825 | Not Available | Negative | 3553104 - 3555986 | 110308.0 |
| nadh pyrophosphatase | CK234_02826 | Not Available | Negative | 3556017 - 3556541 | 19815.6 |
| putative magnesium and cobalt efflux protein, corc-like | CK234_02827 | Not Available | Positive | 3556676 - 3557962 | 48001.9 |
Pathways
343 pathways
Health Effects
No health effects information available for this bacterium.

