Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | CL10T00C06 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1420826 bp
Thymine Count
1424215 bp
Guanine Count
1046299 bp
Cytosine Count
1024853 bp
Genome Length
4918368 bp
Protein-coding Genes
4025 genes
Non-Coding Genes
85 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| putative polysialic acid transport protein, kpsd precursor-like | CK234_02568 | Not Available | Negative | 3245332 - 3247824 | 92131.1 |
| xylose isomerase | CK234_02569 | Not Available | Negative | 3248064 - 3249380 | 49038.9 |
| xylulose kinase | CK234_02570 | Not Available | Negative | 3249474 - 3250967 | 53461.6 |
| nudix domain protein | CK234_02571 | Not Available | Negative | 3251139 - 3251939 | 31079.7 |
| putative alkaline phosphatase synthesis transcriptional regulatory protein, phop-like | CK234_02572 | Not Available | Positive | 3252229 - 3252594 | 14101.4 |
| udp-glucose:undecaprenyl-phosphate glucose-1-phosphate transferase | CK234_02573 | Not Available | Positive | 3252601 - 3253776 | 44978.8 |
| outer membrane efflux protein | CK234_02574 | Not Available | Positive | 3253813 - 3254676 | 32630.1 |
| polysaccharide chain length determinant protein, pep-cterm locus subfamily | CK234_02575 | Not Available | Positive | 3254682 - 3256829 | 82549.7 |
| o-antigen ligase | CK234_02576 | Not Available | Positive | 3256833 - 3258293 | 54828.9 |
| n-acetylglucosaminyl-diphospho-decaprenol l-rhamnosyltransferase | CK234_02577 | Not Available | Positive | 3258274 - 3259179 | 34429.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

