Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | CL10T00C06 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1420826 bp
Thymine Count
1424215 bp
Guanine Count
1046299 bp
Cytosine Count
1024853 bp
Genome Length
4918368 bp
Protein-coding Genes
4025 genes
Non-Coding Genes
85 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| putative pep-cterm system tpr-repeat lipoprotein | CK234_02558 | Not Available | Positive | 3234728 - 3236245 | 59232.0 |
| putative inner membrane protein, yqja-like | CK234_02559 | Not Available | Positive | 3236253 - 3236879 | 23001.3 |
| thiol peroxidase | CK234_02560 | Not Available | Positive | 3236948 - 3237451 | 17976.7 |
| gdp-l-fucose synthase | CK234_02561 | Not Available | Negative | 3237600 - 3238676 | 40581.7 |
| gdp-mannose 4,6-dehydratase | CK234_02562 | Not Available | Negative | 3238676 - 3239758 | 41218.5 |
| putative alginate biosynthesis protein, alga-like | CK234_02563 | Not Available | Negative | 3239934 - 3240998 | 40506.4 |
| udp-glucose:undecaprenyl-phosphate glucose-1-phosphate transferase | CK234_02564 | Not Available | Positive | 3241112 - 3242515 | 54181.0 |
| glucose-1-phosphate thymidylyltransferase 2 | CK234_02565 | Not Available | Positive | 3242551 - 3243438 | 32727.6 |
| dtdp-4-dehydrorhamnose 3,5-epimerase | CK234_02566 | Not Available | Positive | 3243438 - 3244007 | 21738.7 |
| polysaccharide chain length determinant protein, pep-cterm locus subfamily | CK234_02567 | Not Available | Negative | 3244185 - 3245324 | 41526.8 |
Pathways
216 pathways
Health Effects
No health effects information available for this bacterium.

