Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | CL10T00C06 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1420826 bp
Thymine Count
1424215 bp
Guanine Count
1046299 bp
Cytosine Count
1024853 bp
Genome Length
4918368 bp
Protein-coding Genes
4025 genes
Non-Coding Genes
85 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| udp-2,3-diacetamido-2,3-dideoxy-d-glucuronate 2-epimerase | CK234_02338 | Not Available | Positive | 2981798 - 2982886 | 40250.0 |
| protein of unknown function (duf3078) | CK234_02339 | Not Available | Negative | 2982986 - 2984380 | 53456.6 |
| ctp synthase | CK234_02340 | Not Available | Positive | 2984590 - 2986188 | 60081.3 |
| putative membrane protein insertase, yidc-like | CK234_02341 | Not Available | Positive | 2986228 - 2988093 | 70945.9 |
| hypothetical protein | CK234_02342 | Not Available | Negative | 2988023 - 2988256 | 8750.31 |
| prolyl tripeptidyl peptidase precursor | CK234_02343 | Not Available | Positive | 2988321 - 2990426 | 79403.5 |
| periplasmic binding protein | CK234_02344 | Not Available | Positive | 2991656 - 2992807 | 43275.9 |
| putative hemin transport system permease protein, hmuu-like | CK234_02345 | Not Available | Positive | 2992819 - 2993856 | 36729.8 |
| putative siderophore transport system atp-binding protein, yusv-like | CK234_02346 | Not Available | Positive | 2993856 - 2994878 | 37672.8 |
| putative cobalamin biosynthesis protein, cbid-like | CK234_02347 | Not Available | Negative | 2994900 - 2996696 | 66015.2 |
Pathways
216 pathways
Health Effects
No health effects information available for this bacterium.

