Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | CL10T00C06 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1420826 bp
Thymine Count
1424215 bp
Guanine Count
1046299 bp
Cytosine Count
1024853 bp
Genome Length
4918368 bp
Protein-coding Genes
4025 genes
Non-Coding Genes
85 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| putative cytidylate kinase | CK234_02288 | Not Available | Positive | 2928609 - 2929238 | 23564.2 |
| tetratricopeptide repeat protein | CK234_02289 | Not Available | Positive | 2929477 - 2931324 | 72550.0 |
| protein of unknown function (duf3244) | CK234_02290 | Not Available | Positive | 2931483 - 2931887 | 14848.9 |
| hypothetical protein | CK234_02291 | Not Available | Positive | 2932031 - 2932957 | 35904.6 |
| 4-hydroxy-tetrahydrodipicolinate synthase | CK234_02292 | Not Available | Negative | 2933483 - 2934352 | 31860.9 |
| dna ligase | CK234_02293 | Not Available | Negative | 2934478 - 2936475 | 75175.7 |
| trna (guanine-n(1)-)-methyltransferase | CK234_02294 | Not Available | Positive | 2936574 - 2937248 | 25423.7 |
| dihydroorotate dehydrogenase b (nad(+)), catalytic subunit | CK234_02295 | Not Available | Negative | 2937615 - 2938526 | 32305.3 |
| dihydroorotate dehydrogenase b (nad(+)), electron transfer subunit | CK234_02296 | Not Available | Negative | 2938514 - 2939347 | 30744.9 |
| helix-turn-helix protein | CK234_02297 | Not Available | Negative | 2939387 - 2939800 | 15735.5 |
Pathways
216 pathways
Health Effects
No health effects information available for this bacterium.

